miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19735 5' -58.5 NC_004687.1 + 146957 0.67 0.786847
Target:  5'- cCUCaCGGUCAUCgggGAG-UGGGCcGACGg -3'
miRNA:   3'- -GAG-GCCAGUGGa--CUCgGCCUGaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 116472 0.67 0.786847
Target:  5'- -gCCGGgagCACCcgGAGgCGGACcGGCa -3'
miRNA:   3'- gaGGCCa--GUGGa-CUCgGCCUGaCUGc -5'
19735 5' -58.5 NC_004687.1 + 33431 0.67 0.768744
Target:  5'- aCUuuGGUCugUUcGAGgCGGcaGCUGACGc -3'
miRNA:   3'- -GAggCCAGugGA-CUCgGCC--UGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 60986 0.67 0.759515
Target:  5'- cCUCCGGU--CCUG-GCUGGAUggccagGGCGg -3'
miRNA:   3'- -GAGGCCAguGGACuCGGCCUGa-----CUGC- -5'
19735 5' -58.5 NC_004687.1 + 69208 0.67 0.759515
Target:  5'- -aCUGGUCACCgugGAGUCGcGC-GACGg -3'
miRNA:   3'- gaGGCCAGUGGa--CUCGGCcUGaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 131848 0.67 0.759515
Target:  5'- -gCCGGUCGCCcgcucggcGuGCCGG-UUGACGu -3'
miRNA:   3'- gaGGCCAGUGGa-------CuCGGCCuGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 148278 0.68 0.749241
Target:  5'- ---aGGUCACCgagGAGCUGGACaacuaccUGACc -3'
miRNA:   3'- gaggCCAGUGGa--CUCGGCCUG-------ACUGc -5'
19735 5' -58.5 NC_004687.1 + 9411 0.68 0.740746
Target:  5'- cCUCgCGGcucUCGCC-GGGCCGGG-UGGCGg -3'
miRNA:   3'- -GAG-GCC---AGUGGaCUCGGCCUgACUGC- -5'
19735 5' -58.5 NC_004687.1 + 35541 0.68 0.740746
Target:  5'- gUCCGGUCGCC-GAGCac-AUUGGCGc -3'
miRNA:   3'- gAGGCCAGUGGaCUCGgccUGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 43148 0.68 0.702197
Target:  5'- -gCCGGUgcUGCCgGAGCCGGuGCUGcCGg -3'
miRNA:   3'- gaGGCCA--GUGGaCUCGGCC-UGACuGC- -5'
19735 5' -58.5 NC_004687.1 + 75483 0.68 0.702197
Target:  5'- -gCCGGggCGCCUGGGCCcgccggggGGACU-ACGg -3'
miRNA:   3'- gaGGCCa-GUGGACUCGG--------CCUGAcUGC- -5'
19735 5' -58.5 NC_004687.1 + 145735 0.69 0.692399
Target:  5'- -aCCGGUCACCggcgaguacgUGGGCCuGGGCuugggUGACu -3'
miRNA:   3'- gaGGCCAGUGG----------ACUCGG-CCUG-----ACUGc -5'
19735 5' -58.5 NC_004687.1 + 1111 0.69 0.692399
Target:  5'- gUCCGGgCGCCcGGGCCgaucuGGACaGGCGg -3'
miRNA:   3'- gAGGCCaGUGGaCUCGG-----CCUGaCUGC- -5'
19735 5' -58.5 NC_004687.1 + 60816 0.69 0.682553
Target:  5'- aCUCCGGg-GCCUGGuGCCGGAggGAgGu -3'
miRNA:   3'- -GAGGCCagUGGACU-CGGCCUgaCUgC- -5'
19735 5' -58.5 NC_004687.1 + 106598 0.69 0.681566
Target:  5'- gCUCUGGUCGCCcGAGUccaccaaCGGACccucGGCGa -3'
miRNA:   3'- -GAGGCCAGUGGaCUCG-------GCCUGa---CUGC- -5'
19735 5' -58.5 NC_004687.1 + 132771 0.69 0.681566
Target:  5'- --aUGGUCACCacgcgaccgcuguUGAGCCGGAC-GugGu -3'
miRNA:   3'- gagGCCAGUGG-------------ACUCGGCCUGaCugC- -5'
19735 5' -58.5 NC_004687.1 + 43403 0.69 0.672668
Target:  5'- -aCCGG-CACUgcuGCCGGACUcGGCGa -3'
miRNA:   3'- gaGGCCaGUGGacuCGGCCUGA-CUGC- -5'
19735 5' -58.5 NC_004687.1 + 22758 0.69 0.662751
Target:  5'- -aCCGG-CGCCgUGgucgagcuGGCCGcGACUGACGa -3'
miRNA:   3'- gaGGCCaGUGG-AC--------UCGGC-CUGACUGC- -5'
19735 5' -58.5 NC_004687.1 + 76442 0.69 0.652811
Target:  5'- gUCCGGUCgAUCcGGGCUGGACcucgGACu -3'
miRNA:   3'- gAGGCCAG-UGGaCUCGGCCUGa---CUGc -5'
19735 5' -58.5 NC_004687.1 + 65052 0.7 0.61297
Target:  5'- -cUCGGUCGCCUGGGCCacccaGCUGcGCGg -3'
miRNA:   3'- gaGGCCAGUGGACUCGGcc---UGAC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.