miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19736 3' -54.9 NC_004687.1 + 55142 0.66 0.93309
Target:  5'- uCCGAGGGCcagGCC-GGUa--UCCGCg -3'
miRNA:   3'- cGGCUCUUGua-CGGuCCAgagAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 141677 0.66 0.93309
Target:  5'- aGCCGuc-GCGUuCCAGGUC-CUCgGCc -3'
miRNA:   3'- -CGGCucuUGUAcGGUCCAGaGAGgCG- -5'
19736 3' -54.9 NC_004687.1 + 42781 0.66 0.931568
Target:  5'- cGUCGGGGugAUGUguGGccuUCUCgccggucggcaaugUCCGCg -3'
miRNA:   3'- -CGGCUCUugUACGguCC---AGAG--------------AGGCG- -5'
19736 3' -54.9 NC_004687.1 + 102391 0.67 0.927404
Target:  5'- cGCCGGGGACGUacuccagGCCGugggcgguGGUCUUUuuggcguagagCCGCu -3'
miRNA:   3'- -CGGCUCUUGUA-------CGGU--------CCAGAGA-----------GGCG- -5'
19736 3' -54.9 NC_004687.1 + 11304 0.67 0.922536
Target:  5'- cCCGGacGAGgAUGcCCAGGUCgcugggaagguUCUCCGUu -3'
miRNA:   3'- cGGCU--CUUgUAC-GGUCCAG-----------AGAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 111110 0.67 0.922536
Target:  5'- cGCCGGu--CcgGCCAGGUUguucuUCggggCCGCa -3'
miRNA:   3'- -CGGCUcuuGuaCGGUCCAG-----AGa---GGCG- -5'
19736 3' -54.9 NC_004687.1 + 20751 0.67 0.922536
Target:  5'- gGCCGAcGACGuUGCCgaAGGUCUCcagCCa- -3'
miRNA:   3'- -CGGCUcUUGU-ACGG--UCCAGAGa--GGcg -5'
19736 3' -54.9 NC_004687.1 + 35745 0.67 0.916901
Target:  5'- aCUGGGAGaCcgGCgAGGUCUaC-CCGCa -3'
miRNA:   3'- cGGCUCUU-GuaCGgUCCAGA-GaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 54812 0.67 0.916901
Target:  5'- cGCCGAGAACG-GCgGGGUgaagUgUCCGg -3'
miRNA:   3'- -CGGCUCUUGUaCGgUCCAg---AgAGGCg -5'
19736 3' -54.9 NC_004687.1 + 41382 0.67 0.916901
Target:  5'- aCCGAGGGCGcucgcccgGCgGGGUCuccagggcgaccUCUUCGCg -3'
miRNA:   3'- cGGCUCUUGUa-------CGgUCCAG------------AGAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 91695 0.67 0.916901
Target:  5'- gGCCGAGGucgACAcUGCU-GGUCcgCUCCaGCu -3'
miRNA:   3'- -CGGCUCU---UGU-ACGGuCCAGa-GAGG-CG- -5'
19736 3' -54.9 NC_004687.1 + 53274 0.67 0.916901
Target:  5'- cGCCGAGcgcGACGUcCCgcAGGcCUC-CCGCg -3'
miRNA:   3'- -CGGCUC---UUGUAcGG--UCCaGAGaGGCG- -5'
19736 3' -54.9 NC_004687.1 + 120021 0.67 0.91458
Target:  5'- gGCCGGGGAacucgaacgcgucCAUGgugggcguguucuuCCAGGUCUCcCCGg -3'
miRNA:   3'- -CGGCUCUU-------------GUAC--------------GGUCCAGAGaGGCg -5'
19736 3' -54.9 NC_004687.1 + 88770 0.67 0.911027
Target:  5'- uCCGGGAACG-GCUcGGUCUgCagcgUCCGCu -3'
miRNA:   3'- cGGCUCUUGUaCGGuCCAGA-G----AGGCG- -5'
19736 3' -54.9 NC_004687.1 + 15700 0.67 0.911027
Target:  5'- cGCCGAGGugGccaCCAGGUCggcacgCUGCu -3'
miRNA:   3'- -CGGCUCUugUac-GGUCCAGaga---GGCG- -5'
19736 3' -54.9 NC_004687.1 + 43883 0.67 0.909218
Target:  5'- uCCGAGcACAUgaagggcaagccgaGCCAGGUCgUCgcucgCCGUa -3'
miRNA:   3'- cGGCUCuUGUA--------------CGGUCCAG-AGa----GGCG- -5'
19736 3' -54.9 NC_004687.1 + 75949 0.67 0.904916
Target:  5'- cGCUGGGAguACAUGCacaAGGUCaacaagUUCCuGCg -3'
miRNA:   3'- -CGGCUCU--UGUACGg--UCCAGa-----GAGG-CG- -5'
19736 3' -54.9 NC_004687.1 + 6091 0.67 0.904916
Target:  5'- cCCGAcGGGCGUacucggGCCAGGaggccUCUgcCUCCGCg -3'
miRNA:   3'- cGGCU-CUUGUA------CGGUCC-----AGA--GAGGCG- -5'
19736 3' -54.9 NC_004687.1 + 150185 0.67 0.89857
Target:  5'- aCCGAGGGCG-GUCAcgauGGUCUCgcucggCUGCg -3'
miRNA:   3'- cGGCUCUUGUaCGGU----CCAGAGa-----GGCG- -5'
19736 3' -54.9 NC_004687.1 + 107037 0.67 0.89857
Target:  5'- cGCCGAcgcucGACGU-CCAGGUCggUCUGCu -3'
miRNA:   3'- -CGGCUc----UUGUAcGGUCCAGagAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.