miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19737 3' -63.6 NC_004687.1 + 113580 0.67 0.510754
Target:  5'- aACCAccGGACCCucguagucgaucaucGCCCCAgCGCCgUAGGc -3'
miRNA:   3'- -UGGU--CCUGGG---------------UGGGGU-GCGGgGUCUa -5'
19737 3' -63.6 NC_004687.1 + 7740 0.67 0.507025
Target:  5'- aACCAGGGCCgCuauGCCUCGCuGCCCagcgaGGAg -3'
miRNA:   3'- -UGGUCCUGG-G---UGGGGUG-CGGGg----UCUa -5'
19737 3' -63.6 NC_004687.1 + 147879 0.67 0.501452
Target:  5'- gGCCGGGgccgauccaguacaaGCCCgACCCCAagggcaCCCCGGAc -3'
miRNA:   3'- -UGGUCC---------------UGGG-UGGGGUgc----GGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 29587 0.67 0.501452
Target:  5'- uCCAGG-CUCuggACCCCACGCCuccgcccgugcuggaCCAGAUu -3'
miRNA:   3'- uGGUCCuGGG---UGGGGUGCGG---------------GGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 131252 0.67 0.497752
Target:  5'- gGCCAGGGCCCGCCaCUcgucaacaGCGgCCUgCAGGa -3'
miRNA:   3'- -UGGUCCUGGGUGG-GG--------UGC-GGG-GUCUa -5'
19737 3' -63.6 NC_004687.1 + 87378 0.67 0.497752
Target:  5'- cCCGGGugCCGCCaCUucugguCGCgCCAGAUc -3'
miRNA:   3'- uGGUCCugGGUGG-GGu-----GCGgGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 75490 0.67 0.496829
Target:  5'- cGCCuGGGCCCGCCggggggaCUACGgguaCCCAGGUc -3'
miRNA:   3'- -UGGuCCUGGGUGG-------GGUGCg---GGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 117181 0.67 0.488556
Target:  5'- cGCCGGaGAUCagCGCCUCACcgauGCCCCAGGc -3'
miRNA:   3'- -UGGUC-CUGG--GUGGGGUG----CGGGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 112713 0.67 0.488556
Target:  5'- cGCCAcGGGCCaCGCCUCcggcaaGCGCCCCg--- -3'
miRNA:   3'- -UGGU-CCUGG-GUGGGG------UGCGGGGucua -5'
19737 3' -63.6 NC_004687.1 + 89113 0.67 0.485813
Target:  5'- uACCAGGaACCUcccauggccugguuGCCCCacgagacgcucgGCGCCgCCGGGUa -3'
miRNA:   3'- -UGGUCC-UGGG--------------UGGGG------------UGCGG-GGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 101106 0.67 0.479441
Target:  5'- cACC-GGACacuuCACCCCgccguucucgGCGCCCUGGAUg -3'
miRNA:   3'- -UGGuCCUGg---GUGGGG----------UGCGGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 91973 0.67 0.479441
Target:  5'- -gCGGGGCCC-CCUCGgGCCCCGc-- -3'
miRNA:   3'- ugGUCCUGGGuGGGGUgCGGGGUcua -5'
19737 3' -63.6 NC_004687.1 + 18738 0.67 0.479441
Target:  5'- gGCCGaGACCCugcgcaagGCCUCACGCgCCGGGc -3'
miRNA:   3'- -UGGUcCUGGG--------UGGGGUGCGgGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 21020 0.67 0.474012
Target:  5'- gGCCAGGGCCCACCagagguaguaggccgCaCugGUCCCGc-- -3'
miRNA:   3'- -UGGUCCUGGGUGG---------------G-GugCGGGGUcua -5'
19737 3' -63.6 NC_004687.1 + 50996 0.67 0.470409
Target:  5'- cCCGGccCCCAUCCCACGCCgaCCAGc- -3'
miRNA:   3'- uGGUCcuGGGUGGGGUGCGG--GGUCua -5'
19737 3' -63.6 NC_004687.1 + 150960 0.67 0.470409
Target:  5'- cGCCgAGGAUCUgcguccggaACCCCcuGCGCCaCCGGAg -3'
miRNA:   3'- -UGG-UCCUGGG---------UGGGG--UGCGG-GGUCUa -5'
19737 3' -63.6 NC_004687.1 + 9941 0.67 0.461465
Target:  5'- uCCGGG-CCUGCCggGCGCUCCAGGUa -3'
miRNA:   3'- uGGUCCuGGGUGGggUGCGGGGUCUA- -5'
19737 3' -63.6 NC_004687.1 + 54085 0.67 0.461465
Target:  5'- aGCCGGGcCCCGCacuaCCugGCCaugCGGGUg -3'
miRNA:   3'- -UGGUCCuGGGUGg---GGugCGGg--GUCUA- -5'
19737 3' -63.6 NC_004687.1 + 145214 0.67 0.461465
Target:  5'- gGCCAGGGCgCCgACCCCaACGacaCCUGGGc -3'
miRNA:   3'- -UGGUCCUG-GG-UGGGG-UGCg--GGGUCUa -5'
19737 3' -63.6 NC_004687.1 + 135064 0.67 0.460576
Target:  5'- gGCCAGGGCCCGgCgCGCGgCCacgaucagcuuggCCAGAUc -3'
miRNA:   3'- -UGGUCCUGGGUgGgGUGC-GG-------------GGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.