miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19737 5' -54.3 NC_004687.1 + 58022 0.67 0.903896
Target:  5'- aGUcgGGUG----UGGCcgGaCGCGCCGa -3'
miRNA:   3'- -CGuaCCACuugaACCGuaC-GCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 118655 0.67 0.903896
Target:  5'- uGCGaGGUGAucaaGCUcGGCGgcgGCGgCGCCu -3'
miRNA:   3'- -CGUaCCACU----UGAaCCGUa--CGC-GCGGc -5'
19737 5' -54.3 NC_004687.1 + 126931 0.68 0.897424
Target:  5'- gGCGUGGuUGAGCaugGGCccGUGCGgGUCc -3'
miRNA:   3'- -CGUACC-ACUUGaa-CCG--UACGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 45820 0.68 0.890714
Target:  5'- ---cGGcGGGCggcGGCAUccaGCGCGCCGg -3'
miRNA:   3'- cguaCCaCUUGaa-CCGUA---CGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 78922 0.68 0.88377
Target:  5'- aCGUGGUGAugUggaccGGCAacggcaccguggUGCacGCGCCGc -3'
miRNA:   3'- cGUACCACUugAa----CCGU------------ACG--CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 95500 0.68 0.88377
Target:  5'- -gAUGGUcGACgcGGUcUGCGUGCCGg -3'
miRNA:   3'- cgUACCAcUUGaaCCGuACGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 97630 0.68 0.876597
Target:  5'- cGCA-GGUGGccguACUUGGCGUgaGUGUGCUc -3'
miRNA:   3'- -CGUaCCACU----UGAACCGUA--CGCGCGGc -5'
19737 5' -54.3 NC_004687.1 + 140815 0.68 0.869199
Target:  5'- ---gGGUGGcCUUGGCGaccGCGuCGCCGu -3'
miRNA:   3'- cguaCCACUuGAACCGUa--CGC-GCGGC- -5'
19737 5' -54.3 NC_004687.1 + 22221 0.68 0.869199
Target:  5'- aCAUGGUGGGCcaGGguUGCGgcaGCCu -3'
miRNA:   3'- cGUACCACUUGaaCCguACGCg--CGGc -5'
19737 5' -54.3 NC_004687.1 + 118891 0.69 0.864655
Target:  5'- uCGUGGUGGACggaggcuucuuugGGCcgGaccgaCGCGCCGg -3'
miRNA:   3'- cGUACCACUUGaa-----------CCGuaC-----GCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 123322 0.69 0.861583
Target:  5'- cGCAuUGGUGcGCUUGGUgcGCagcaGCGUCGg -3'
miRNA:   3'- -CGU-ACCACuUGAACCGuaCG----CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 121172 0.69 0.853753
Target:  5'- ---cGGUGAACUccUGGCcaccaGCGCuGCCGu -3'
miRNA:   3'- cguaCCACUUGA--ACCGua---CGCG-CGGC- -5'
19737 5' -54.3 NC_004687.1 + 38572 0.69 0.853753
Target:  5'- cGCAUGGccAGCUUGGU--GCcCGCCGg -3'
miRNA:   3'- -CGUACCacUUGAACCGuaCGcGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 6187 0.69 0.845717
Target:  5'- gGCGUggGGUGggUccUGGuCGUGCGCGaCCa -3'
miRNA:   3'- -CGUA--CCACuuGa-ACC-GUACGCGC-GGc -5'
19737 5' -54.3 NC_004687.1 + 67973 0.69 0.820441
Target:  5'- aCggGGUGAACagGGCGcucagcgGCGCGUCGa -3'
miRNA:   3'- cGuaCCACUUGaaCCGUa------CGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 134296 0.7 0.811652
Target:  5'- ---cGGUGAGCccgaccaggaUGGCGUGCgGCGUCGa -3'
miRNA:   3'- cguaCCACUUGa---------ACCGUACG-CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 118139 0.7 0.802697
Target:  5'- gGCGUGGUGGACgc-GCugaucaagGUGgGCGCCu -3'
miRNA:   3'- -CGUACCACUUGaacCG--------UACgCGCGGc -5'
19737 5' -54.3 NC_004687.1 + 120497 0.7 0.802697
Target:  5'- cGCuUGGUcaggccGAacuGCUUGGCgaugccugccGUGCGCGCCa -3'
miRNA:   3'- -CGuACCA------CU---UGAACCG----------UACGCGCGGc -5'
19737 5' -54.3 NC_004687.1 + 76282 0.7 0.793582
Target:  5'- gGCcgGGcgccGAACUUGcGCAUGaugucgGCGCCGg -3'
miRNA:   3'- -CGuaCCa---CUUGAAC-CGUACg-----CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 63621 0.7 0.788041
Target:  5'- ---cGGUGGACUggcucucauggccgcUGGCGacaGCGCGCUGg -3'
miRNA:   3'- cguaCCACUUGA---------------ACCGUa--CGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.