miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 5' -61.4 NC_004687.1 + 40272 0.66 0.649015
Target:  5'- cGgGCUCGuaG-GCCaGCGAGGaCAGCGc -3'
miRNA:   3'- -CgCGAGUggCaCGG-CGCUCC-GUCGCa -5'
19738 5' -61.4 NC_004687.1 + 98347 0.67 0.639152
Target:  5'- -gGuCUCGCUG-GCCaGCGcGGGCAGCGc -3'
miRNA:   3'- cgC-GAGUGGCaCGG-CGC-UCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 58724 0.67 0.639152
Target:  5'- cCGCUUAcaaggcggauguCCGUGCCGCuggaccacaGAGGCGGgGc -3'
miRNA:   3'- cGCGAGU------------GGCACGGCG---------CUCCGUCgCa -5'
19738 5' -61.4 NC_004687.1 + 148814 0.67 0.638165
Target:  5'- cGCGCuacuUCGCCGaccagGCCGCGcgugaggagcgcaAGGCcgAGCGg -3'
miRNA:   3'- -CGCG----AGUGGCa----CGGCGC-------------UCCG--UCGCa -5'
19738 5' -61.4 NC_004687.1 + 44755 0.67 0.629282
Target:  5'- gGUGaacaUCACCGgacgggcGCCGCGccGCAGCGc -3'
miRNA:   3'- -CGCg---AGUGGCa------CGGCGCucCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 2776 0.67 0.619415
Target:  5'- gGUGCUgGCC-UGCCGCaccgcgcccGGCGGCGa -3'
miRNA:   3'- -CGCGAgUGGcACGGCGcu-------CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 63875 0.67 0.619415
Target:  5'- gGCGCggccUACCGUGaCCaCGAccacGGCGGCGa -3'
miRNA:   3'- -CGCGa---GUGGCAC-GGcGCU----CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 107305 0.67 0.609557
Target:  5'- gGCGCUgGCCaUGCCGCugcgcggaccGAGGguGUa- -3'
miRNA:   3'- -CGCGAgUGGcACGGCG----------CUCCguCGca -5'
19738 5' -61.4 NC_004687.1 + 111602 0.67 0.609557
Target:  5'- gGCGUccaCGCCGUGCuCGCGc-GCGGUGUc -3'
miRNA:   3'- -CGCGa--GUGGCACG-GCGCucCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 84881 0.67 0.609557
Target:  5'- gGCGCUCaaucuGCCGgGCCuuGAGGUuGCGg -3'
miRNA:   3'- -CGCGAG-----UGGCaCGGcgCUCCGuCGCa -5'
19738 5' -61.4 NC_004687.1 + 74912 0.67 0.599715
Target:  5'- cGUGCUCACgGUGuuGuCGGucGGCGuGCGg -3'
miRNA:   3'- -CGCGAGUGgCACggC-GCU--CCGU-CGCa -5'
19738 5' -61.4 NC_004687.1 + 81994 0.67 0.599715
Target:  5'- cGgGUUCACCGccugGCCGCGcgcGGCcaucauguuGGCGUa -3'
miRNA:   3'- -CgCGAGUGGCa---CGGCGCu--CCG---------UCGCA- -5'
19738 5' -61.4 NC_004687.1 + 106035 0.67 0.599715
Target:  5'- aGCGCUCGCUGUcGCC-UGAGG-AGCu- -3'
miRNA:   3'- -CGCGAGUGGCA-CGGcGCUCCgUCGca -5'
19738 5' -61.4 NC_004687.1 + 24903 0.67 0.599715
Target:  5'- gGCuGCaaccaUCGCCGc-CCGCGAGGCuGCGa -3'
miRNA:   3'- -CG-CG-----AGUGGCacGGCGCUCCGuCGCa -5'
19738 5' -61.4 NC_004687.1 + 62907 0.67 0.589894
Target:  5'- aCGuCUCGCCGUugguGCCGUaGAGGUAGUa- -3'
miRNA:   3'- cGC-GAGUGGCA----CGGCG-CUCCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 90092 0.67 0.588914
Target:  5'- cGUGCUucguuucCGCCGUGCgGCuGGGGCuggggaGGCGg -3'
miRNA:   3'- -CGCGA-------GUGGCACGgCG-CUCCG------UCGCa -5'
19738 5' -61.4 NC_004687.1 + 117167 0.68 0.580103
Target:  5'- gGCGC-CACCgGUGCCGCcgGAGauCAGCGc -3'
miRNA:   3'- -CGCGaGUGG-CACGGCG--CUCc-GUCGCa -5'
19738 5' -61.4 NC_004687.1 + 49406 0.68 0.580103
Target:  5'- cGCaGCUCAUCGgggucgauguUGCCGCGccGGUAGCa- -3'
miRNA:   3'- -CG-CGAGUGGC----------ACGGCGCu-CCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 95828 0.68 0.570346
Target:  5'- gGCGCUCGuuUUGagGCCGCuucGGCGGCGUu -3'
miRNA:   3'- -CGCGAGU--GGCa-CGGCGcu-CCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 124525 0.68 0.56063
Target:  5'- gGUGCacaACCGUGCCGaCGAGGacgaCGGCa- -3'
miRNA:   3'- -CGCGag-UGGCACGGC-GCUCC----GUCGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.