miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19739 3' -53.9 NC_004687.1 + 148194 1.11 0.002721
Target:  5'- aUAGCGGCCCUGGUUGAUGUGAUUGCCg -3'
miRNA:   3'- -AUCGCCGGGACCAACUACACUAACGG- -5'
19739 3' -53.9 NC_004687.1 + 133325 0.72 0.675598
Target:  5'- -uGCGGCCCUccuuucggugGGUggUGGUaGUGggUGCCg -3'
miRNA:   3'- auCGCCGGGA----------CCA--ACUA-CACuaACGG- -5'
19739 3' -53.9 NC_004687.1 + 136849 0.72 0.686003
Target:  5'- cGGCGGCaCCUGGUcGGUGg---UGCUg -3'
miRNA:   3'- aUCGCCG-GGACCAaCUACacuaACGG- -5'
19739 3' -53.9 NC_004687.1 + 155330 0.72 0.686003
Target:  5'- cUGGUGGCCCUGGUgc---UGAgccUGCCg -3'
miRNA:   3'- -AUCGCCGGGACCAacuacACUa--ACGG- -5'
19739 3' -53.9 NC_004687.1 + 91132 0.72 0.696362
Target:  5'- -cGgGGCCCcGGcgacgaccaaGAUGUGGUUGCCg -3'
miRNA:   3'- auCgCCGGGaCCaa--------CUACACUAACGG- -5'
19739 3' -53.9 NC_004687.1 + 45531 0.72 0.696362
Target:  5'- cAGCGGCCa-GGUUGGUgGUGAUcaagGUCg -3'
miRNA:   3'- aUCGCCGGgaCCAACUA-CACUAa---CGG- -5'
19739 3' -53.9 NC_004687.1 + 12896 0.71 0.737134
Target:  5'- -cGCaGGCCCgucgGGUUGAagGUGAagguggUGCCa -3'
miRNA:   3'- auCG-CCGGGa---CCAACUa-CACUa-----ACGG- -5'
19739 3' -53.9 NC_004687.1 + 80680 0.69 0.822281
Target:  5'- gAGCGGCCauuCUGGUUGAUcucg--GCCa -3'
miRNA:   3'- aUCGCCGG---GACCAACUAcacuaaCGG- -5'
19739 3' -53.9 NC_004687.1 + 88129 0.69 0.830953
Target:  5'- gGGUGGCCgaGcaugucggcgacGUUGAcccgGUGGUUGCCg -3'
miRNA:   3'- aUCGCCGGgaC------------CAACUa---CACUAACGG- -5'
19739 3' -53.9 NC_004687.1 + 136177 0.69 0.8469
Target:  5'- aUGGCGGucauuucggggcuCCUUGGUguGUGUGAgUGCCu -3'
miRNA:   3'- -AUCGCC-------------GGGACCAacUACACUaACGG- -5'
19739 3' -53.9 NC_004687.1 + 69089 0.69 0.847719
Target:  5'- -cGUGGUCUc-GUUGAUGcUGGUUGCCa -3'
miRNA:   3'- auCGCCGGGacCAACUAC-ACUAACGG- -5'
19739 3' -53.9 NC_004687.1 + 100880 0.69 0.863662
Target:  5'- -cGCGGCCCaGGUcg--GUGAUccGCCa -3'
miRNA:   3'- auCGCCGGGaCCAacuaCACUAa-CGG- -5'
19739 3' -53.9 NC_004687.1 + 94099 0.68 0.878726
Target:  5'- gGGCuGGCCCUGGgucggcgUGccaGUGAU-GCCc -3'
miRNA:   3'- aUCG-CCGGGACCa------ACua-CACUAaCGG- -5'
19739 3' -53.9 NC_004687.1 + 91885 0.68 0.892865
Target:  5'- gAG-GGCCCgGcGUagucgugGGUGUGGUUGCCc -3'
miRNA:   3'- aUCgCCGGGaC-CAa------CUACACUAACGG- -5'
19739 3' -53.9 NC_004687.1 + 31758 0.68 0.899576
Target:  5'- gAGCGGaCgCCUGGacgUUGAaguggcgcuguuUGUGGUUGCg -3'
miRNA:   3'- aUCGCC-G-GGACC---AACU------------ACACUAACGg -5'
19739 3' -53.9 NC_004687.1 + 52536 0.67 0.906043
Target:  5'- gAGCGGaUCUGGUgGGUgGUGAcgaacUUGCCg -3'
miRNA:   3'- aUCGCCgGGACCAaCUA-CACU-----AACGG- -5'
19739 3' -53.9 NC_004687.1 + 120935 0.67 0.918233
Target:  5'- cAGCGGCCCcGG-UGggGUccucUGCCg -3'
miRNA:   3'- aUCGCCGGGaCCaACuaCAcua-ACGG- -5'
19739 3' -53.9 NC_004687.1 + 24681 0.67 0.923953
Target:  5'- gUGGCgGGCCCUGGccGGUGUcGAg-GUCa -3'
miRNA:   3'- -AUCG-CCGGGACCaaCUACA-CUaaCGG- -5'
19739 3' -53.9 NC_004687.1 + 31213 0.67 0.923953
Target:  5'- cGGCGGUgCUGG-UGAUuUGuucaGUUGCCu -3'
miRNA:   3'- aUCGCCGgGACCaACUAcAC----UAACGG- -5'
19739 3' -53.9 NC_004687.1 + 19908 0.67 0.92942
Target:  5'- cUGGCGGgCgaGGUgcaGAUGUGGcUGCg -3'
miRNA:   3'- -AUCGCCgGgaCCAa--CUACACUaACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.