miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19739 5' -63.7 NC_004687.1 + 102229 0.66 0.529266
Target:  5'- cACGGUGGCGcucauCGGCCAGaugguGGCCGUg -3'
miRNA:   3'- -UGCCGCUGCuccu-GCCGGUC-----CCGGUA- -5'
19739 5' -63.7 NC_004687.1 + 33782 0.66 0.529266
Target:  5'- cCGGCGGCaAGGA-GGCCcGGcGCCGc -3'
miRNA:   3'- uGCCGCUGcUCCUgCCGGuCC-CGGUa -5'
19739 5' -63.7 NC_004687.1 + 4583 0.66 0.529266
Target:  5'- uGCGGCGGCgcaccucggggGAGGACugaugaacuGGCCAGcGGUCc- -3'
miRNA:   3'- -UGCCGCUG-----------CUCCUG---------CCGGUC-CCGGua -5'
19739 5' -63.7 NC_004687.1 + 138483 0.66 0.529266
Target:  5'- cUGGCGcucgcacagccGCGcGGACaGCCGGaGGCCAUg -3'
miRNA:   3'- uGCCGC-----------UGCuCCUGcCGGUC-CCGGUA- -5'
19739 5' -63.7 NC_004687.1 + 16666 0.67 0.519873
Target:  5'- gUGGCGACGAGGuCGGaCAGGucGCuCAc -3'
miRNA:   3'- uGCCGCUGCUCCuGCCgGUCC--CG-GUa -5'
19739 5' -63.7 NC_004687.1 + 127742 0.67 0.519873
Target:  5'- gACGGCGAgGccGACGGCaa-GGCCGg -3'
miRNA:   3'- -UGCCGCUgCucCUGCCGgucCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 14617 0.67 0.510546
Target:  5'- gACGGCGGCaAGaccAUGcGUCAGGGCCAc -3'
miRNA:   3'- -UGCCGCUGcUCc--UGC-CGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 45589 0.67 0.510546
Target:  5'- gAUGGCGuCGaAGGuggucuCGGCCAGcGCCAg -3'
miRNA:   3'- -UGCCGCuGC-UCCu-----GCCGGUCcCGGUa -5'
19739 5' -63.7 NC_004687.1 + 105187 0.67 0.510546
Target:  5'- aGCGGCG-CaAGGA-GGCCGGuGGCUAg -3'
miRNA:   3'- -UGCCGCuGcUCCUgCCGGUC-CCGGUa -5'
19739 5' -63.7 NC_004687.1 + 147118 0.67 0.501289
Target:  5'- cCGGUGAUGgucagugcGGGuGCGGCCAGgacGGCCAc -3'
miRNA:   3'- uGCCGCUGC--------UCC-UGCCGGUC---CCGGUa -5'
19739 5' -63.7 NC_004687.1 + 135046 0.67 0.501289
Target:  5'- aACGGCGuccuCGAc-GCgGGCCAGGGCCc- -3'
miRNA:   3'- -UGCCGCu---GCUccUG-CCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 7004 0.67 0.500367
Target:  5'- -aGGCGACGAGuACaagcuguGGCCgaaacaguGGGGCCAg -3'
miRNA:   3'- ugCCGCUGCUCcUG-------CCGG--------UCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 106279 0.67 0.492107
Target:  5'- gAUGGCGAuggcCGGGGugGaGCCGGuGGUCu- -3'
miRNA:   3'- -UGCCGCU----GCUCCugC-CGGUC-CCGGua -5'
19739 5' -63.7 NC_004687.1 + 25577 0.67 0.492107
Target:  5'- cAUGGaCGACGAuGAgGGCU-GGGCCAa -3'
miRNA:   3'- -UGCC-GCUGCUcCUgCCGGuCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 94976 0.67 0.492107
Target:  5'- aACGGCG-CGcuGGCcGUCGGGGCCAc -3'
miRNA:   3'- -UGCCGCuGCucCUGcCGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 146726 0.67 0.486635
Target:  5'- gGCGGUGGCGAucggggcggaagauaGGacagcggcuGCGGCCAGaGCCAg -3'
miRNA:   3'- -UGCCGCUGCU---------------CC---------UGCCGGUCcCGGUa -5'
19739 5' -63.7 NC_004687.1 + 19201 0.67 0.483003
Target:  5'- cACGGCcucGACGAGGugGucgaccugguccGCCAGacgcaGGCCAg -3'
miRNA:   3'- -UGCCG---CUGCUCCugC------------CGGUC-----CCGGUa -5'
19739 5' -63.7 NC_004687.1 + 20493 0.67 0.483003
Target:  5'- -aGGUGuCGuucuuccGGuCGGCCAGGGCCu- -3'
miRNA:   3'- ugCCGCuGCu------CCuGCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 150343 0.67 0.473981
Target:  5'- gACGGUcgccGACGAGGGC-GCCAGGacGUCAg -3'
miRNA:   3'- -UGCCG----CUGCUCCUGcCGGUCC--CGGUa -5'
19739 5' -63.7 NC_004687.1 + 152257 0.67 0.473981
Target:  5'- cCGGUGGCcAGGacgaucGCGGCCAuGGCCAc -3'
miRNA:   3'- uGCCGCUGcUCC------UGCCGGUcCCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.