miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19740 3' -53.1 NC_004687.1 + 14275 0.66 0.969383
Target:  5'- uGGUGCUgcgCGAGC-GGcgcgGCUGGAGc -3'
miRNA:   3'- -CUACGAacaGCUCGaCCa---CGACCUUc -5'
19740 3' -53.1 NC_004687.1 + 14423 0.66 0.962801
Target:  5'- uGGUGgUUGUCGAGUUGGcccggucgaaguUGUcaccgauggUGGAGGa -3'
miRNA:   3'- -CUACgAACAGCUCGACC------------ACG---------ACCUUC- -5'
19740 3' -53.1 NC_004687.1 + 87564 0.67 0.948593
Target:  5'- aGGUGCUUcaucGUCGAGCUgaugccgaccgcgccGGUGUcGGAGu -3'
miRNA:   3'- -CUACGAA----CAGCUCGA---------------CCACGaCCUUc -5'
19740 3' -53.1 NC_004687.1 + 155433 0.67 0.946819
Target:  5'- aGUGCggGcCGAauuuccGUUGGUGCUGGGAc -3'
miRNA:   3'- cUACGaaCaGCU------CGACCACGACCUUc -5'
19740 3' -53.1 NC_004687.1 + 43070 0.67 0.946819
Target:  5'- --aGCaUGUUGAuCUGGUGCUGGc-- -3'
miRNA:   3'- cuaCGaACAGCUcGACCACGACCuuc -5'
19740 3' -53.1 NC_004687.1 + 84053 0.67 0.94221
Target:  5'- cGAUGgc-GUCG-GCgUGGUGCUGGAu- -3'
miRNA:   3'- -CUACgaaCAGCuCG-ACCACGACCUuc -5'
19740 3' -53.1 NC_004687.1 + 136850 0.67 0.926865
Target:  5'- gGcgGCaccugGUCGG--UGGUGCUGGAAGa -3'
miRNA:   3'- -CuaCGaa---CAGCUcgACCACGACCUUC- -5'
19740 3' -53.1 NC_004687.1 + 126448 0.68 0.915362
Target:  5'- cGAUGCgcaagGUcgucgcCGAGCUGGacuccaaGCUGGAGGc -3'
miRNA:   3'- -CUACGaa---CA------GCUCGACCa------CGACCUUC- -5'
19740 3' -53.1 NC_004687.1 + 140903 0.69 0.882211
Target:  5'- gGcgGCggcGUCGaAGCUGGUG-UGGAAGc -3'
miRNA:   3'- -CuaCGaa-CAGC-UCGACCACgACCUUC- -5'
19740 3' -53.1 NC_004687.1 + 146220 0.69 0.874853
Target:  5'- --aGCagGUCGAGCgcaacggcaUGGUGCUGGccGg -3'
miRNA:   3'- cuaCGaaCAGCUCG---------ACCACGACCuuC- -5'
19740 3' -53.1 NC_004687.1 + 119375 0.7 0.834719
Target:  5'- --aGCgguUCGcGCUGGUGCUGGAu- -3'
miRNA:   3'- cuaCGaacAGCuCGACCACGACCUuc -5'
19740 3' -53.1 NC_004687.1 + 119040 0.73 0.672797
Target:  5'- aGAUGCUggcggacccgguccuUGagCGAgggagccgguGCUGGUGCUGGAGGa -3'
miRNA:   3'- -CUACGA---------------ACa-GCU----------CGACCACGACCUUC- -5'
19740 3' -53.1 NC_004687.1 + 58691 0.74 0.615799
Target:  5'- aGGUGCcgGUCGAGCcGG-GCUGGGAc -3'
miRNA:   3'- -CUACGaaCAGCUCGaCCaCGACCUUc -5'
19740 3' -53.1 NC_004687.1 + 147568 1.08 0.005255
Target:  5'- uGAUGCUUGUCGAGCUGGUGCUGGAAGu -3'
miRNA:   3'- -CUACGAACAGCUCGACCACGACCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.