miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19740 5' -51.5 NC_004687.1 + 89404 0.68 0.946736
Target:  5'- cGCUggcUGCGCggcucgGCGCGGUGCgaccUCGACGGc -3'
miRNA:   3'- aUGA---ACGCG------UGCGUCAUG----AGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 24904 0.68 0.93707
Target:  5'- cGCUcgGCGUcCGuCAGcUGCUCGACGAUg -3'
miRNA:   3'- aUGAa-CGCGuGC-GUC-AUGAGCUGUUA- -5'
19740 5' -51.5 NC_004687.1 + 127364 0.68 0.93707
Target:  5'- aGCUUGCGCugaGCGGccucggcCUCGACGAc -3'
miRNA:   3'- aUGAACGCGug-CGUCau-----GAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 90293 0.68 0.93707
Target:  5'- aGCUUGCGCagcaGCGCGGUggccACcCGACGc- -3'
miRNA:   3'- aUGAACGCG----UGCGUCA----UGaGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 143523 0.68 0.93707
Target:  5'- aGCUgaugGCcuuCGCGCAGUGCUCGguGCAGa -3'
miRNA:   3'- aUGAa---CGc--GUGCGUCAUGAGC--UGUUa -5'
19740 5' -51.5 NC_004687.1 + 85864 0.68 0.93707
Target:  5'- gGC-UGUGCACGCAGccUGCUCGGu--- -3'
miRNA:   3'- aUGaACGCGUGCGUC--AUGAGCUguua -5'
19740 5' -51.5 NC_004687.1 + 86111 0.68 0.93707
Target:  5'- gUGCcgGUGCGCGCGGUcgcggcggACUCGACc-- -3'
miRNA:   3'- -AUGaaCGCGUGCGUCA--------UGAGCUGuua -5'
19740 5' -51.5 NC_004687.1 + 149603 0.68 0.936559
Target:  5'- gACUUGCGCacucgcgugcgACGCAuGUgcgacgaGCUCGACAu- -3'
miRNA:   3'- aUGAACGCG-----------UGCGU-CA-------UGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 147086 0.69 0.931842
Target:  5'- gGCUcGCGCugGCGGgug-CGACGAa -3'
miRNA:   3'- aUGAaCGCGugCGUCaugaGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 104815 0.69 0.931842
Target:  5'- aGCUUGCGUccgcccauGCGCugcuuGgcCUCGACAAUg -3'
miRNA:   3'- aUGAACGCG--------UGCGu----CauGAGCUGUUA- -5'
19740 5' -51.5 NC_004687.1 + 111614 0.69 0.926351
Target:  5'- gUGCU--CGCGCGCGGUG-UCGACAGc -3'
miRNA:   3'- -AUGAacGCGUGCGUCAUgAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 150751 0.69 0.90829
Target:  5'- -cCUUGCGCGCGgAucGCUCGGCGc- -3'
miRNA:   3'- auGAACGCGUGCgUcaUGAGCUGUua -5'
19740 5' -51.5 NC_004687.1 + 102919 0.7 0.894944
Target:  5'- ----cGCGCGCGCGGguccaccgGCUCGACc-- -3'
miRNA:   3'- augaaCGCGUGCGUCa-------UGAGCUGuua -5'
19740 5' -51.5 NC_004687.1 + 139028 0.7 0.880582
Target:  5'- -cCUUGCGCugGCGGUcggcCUCGuCGAUc -3'
miRNA:   3'- auGAACGCGugCGUCAu---GAGCuGUUA- -5'
19740 5' -51.5 NC_004687.1 + 49599 0.7 0.880582
Target:  5'- gACUggUGCGguCGaAGUACUCGGCAGc -3'
miRNA:   3'- aUGA--ACGCguGCgUCAUGAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 118224 0.71 0.831833
Target:  5'- aGCUggccagGCGCugGCGGUuggcCUCGGCGGc -3'
miRNA:   3'- aUGAa-----CGCGugCGUCAu---GAGCUGUUa -5'
19740 5' -51.5 NC_004687.1 + 147603 1.05 0.011199
Target:  5'- gUACUUGCGCACGCAGUACUCGACAAUg -3'
miRNA:   3'- -AUGAACGCGUGCGUCAUGAGCUGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.