miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19741 3' -52.9 NC_004687.1 + 11231 0.66 0.974716
Target:  5'- -uGGUGagCCgguuggcGUCGUUGGUcGGCAGg -3'
miRNA:   3'- guCCACa-GGaa-----CAGCAACCAcUCGUC- -5'
19741 3' -52.9 NC_004687.1 + 137922 0.67 0.958802
Target:  5'- uGGGUGcUCCUg--CGUgugUGGUGGGUGGu -3'
miRNA:   3'- gUCCAC-AGGAacaGCA---ACCACUCGUC- -5'
19741 3' -52.9 NC_004687.1 + 22197 0.67 0.954941
Target:  5'- gAGGUcaGUCCcagGUCGUgggccacaUGGUGGGcCAGg -3'
miRNA:   3'- gUCCA--CAGGaa-CAGCA--------ACCACUC-GUC- -5'
19741 3' -52.9 NC_004687.1 + 17789 0.67 0.952511
Target:  5'- gUAGGUGUCCagcaggucgUUGagauaggcgaucugcUCGUUGGUggccugcugGAGCAGg -3'
miRNA:   3'- -GUCCACAGG---------AAC---------------AGCAACCA---------CUCGUC- -5'
19741 3' -52.9 NC_004687.1 + 139601 0.67 0.950843
Target:  5'- uGGGUGUCUgUGUgG-UGGUGuGCAc -3'
miRNA:   3'- gUCCACAGGaACAgCaACCACuCGUc -5'
19741 3' -52.9 NC_004687.1 + 30045 0.68 0.937084
Target:  5'- aGGGgaaacgaacgGUCCUgGUCGgugaUGGUGAGCuGg -3'
miRNA:   3'- gUCCa---------CAGGAaCAGCa---ACCACUCGuC- -5'
19741 3' -52.9 NC_004687.1 + 138580 0.68 0.932002
Target:  5'- gCAGGUG--CUUGUUGUUGGUGcGCu- -3'
miRNA:   3'- -GUCCACagGAACAGCAACCACuCGuc -5'
19741 3' -52.9 NC_004687.1 + 96914 0.69 0.902839
Target:  5'- gGGGUGUCC-UGcCGg-GGUGuAGCGGg -3'
miRNA:   3'- gUCCACAGGaACaGCaaCCAC-UCGUC- -5'
19741 3' -52.9 NC_004687.1 + 25624 0.69 0.899582
Target:  5'- gCAGGacgaccucggcguUGUCCUUGgucaggucccgagCGUUGGUGuAGUAGg -3'
miRNA:   3'- -GUCC-------------ACAGGAACa------------GCAACCAC-UCGUC- -5'
19741 3' -52.9 NC_004687.1 + 44622 0.71 0.826828
Target:  5'- cCAGcagGUCCUgugCGUUGGUGAGCuGg -3'
miRNA:   3'- -GUCca-CAGGAacaGCAACCACUCGuC- -5'
19741 3' -52.9 NC_004687.1 + 16011 0.71 0.800081
Target:  5'- gUAGGaGcCCUUGUCGUcGGUG-GCAGu -3'
miRNA:   3'- -GUCCaCaGGAACAGCAaCCACuCGUC- -5'
19741 3' -52.9 NC_004687.1 + 18352 0.8 0.344267
Target:  5'- --cGUGUUCUUuUCGUUGGUGAGCAGg -3'
miRNA:   3'- gucCACAGGAAcAGCAACCACUCGUC- -5'
19741 3' -52.9 NC_004687.1 + 145996 1.08 0.006387
Target:  5'- cCAGGUGUCCUUGUCGUUGGUGAGCAGc -3'
miRNA:   3'- -GUCCACAGGAACAGCAACCACUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.