miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19741 5' -57.5 NC_004687.1 + 100396 0.66 0.82971
Target:  5'- -uUGGUcgaccuUgCGGUGACGACcAGGGCUAg -3'
miRNA:   3'- cuGCCG------AgGCUACUGCUGuUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 120079 0.66 0.82971
Target:  5'- --aGGCUaUCGgcGACGACGAGGcGCUg -3'
miRNA:   3'- cugCCGA-GGCuaCUGCUGUUCC-CGGu -5'
19741 5' -57.5 NC_004687.1 + 132148 0.66 0.82971
Target:  5'- -uCGGCgcgaCCGcaggaccuUGACGGCcuGGGCCAg -3'
miRNA:   3'- cuGCCGa---GGCu-------ACUGCUGuuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 116159 0.66 0.82971
Target:  5'- uGCGGUUCCGGcUGGCGGgcuUGAGGuuGCCAc -3'
miRNA:   3'- cUGCCGAGGCU-ACUGCU---GUUCC--CGGU- -5'
19741 5' -57.5 NC_004687.1 + 51288 0.67 0.8247
Target:  5'- -cCGGCgugCCGAuccaguacgacgugcUgGACGACcuGGGCCAg -3'
miRNA:   3'- cuGCCGa--GGCU---------------A-CUGCUGuuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 70951 0.67 0.821325
Target:  5'- cGGCGGCU-CGGUGAgCGcACGgucAGGGUCGa -3'
miRNA:   3'- -CUGCCGAgGCUACU-GC-UGU---UCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 59839 0.67 0.821325
Target:  5'- uGugGGCUUCu-UGGCGGCAGGaGcGCCu -3'
miRNA:   3'- -CugCCGAGGcuACUGCUGUUC-C-CGGu -5'
19741 5' -57.5 NC_004687.1 + 26702 0.67 0.821325
Target:  5'- cGGCGGCUaCGAcGcCGACAA-GGCCGa -3'
miRNA:   3'- -CUGCCGAgGCUaCuGCUGUUcCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 71592 0.67 0.812772
Target:  5'- cACGGCUgugugcucaCCGAcauCGACGAGGGCgAg -3'
miRNA:   3'- cUGCCGA---------GGCUacuGCUGUUCCCGgU- -5'
19741 5' -57.5 NC_004687.1 + 116384 0.67 0.812772
Target:  5'- -cCGGC-CCGgcGACGcCAggcgccGGGGCCAc -3'
miRNA:   3'- cuGCCGaGGCuaCUGCuGU------UCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 149653 0.67 0.812772
Target:  5'- cGACGGCUCCGAgagccuCGACugcauGGUCGg -3'
miRNA:   3'- -CUGCCGAGGCUacu---GCUGuuc--CCGGU- -5'
19741 5' -57.5 NC_004687.1 + 115164 0.67 0.811908
Target:  5'- aGGCGGCUUCGGcUGcCGACAccccaucAGGGaCCc -3'
miRNA:   3'- -CUGCCGAGGCU-ACuGCUGU-------UCCC-GGu -5'
19741 5' -57.5 NC_004687.1 + 94344 0.67 0.807563
Target:  5'- aGACGGUgCCGGugaacgucggguuguUGAuCGGCGcccgcAGGGCCAa -3'
miRNA:   3'- -CUGCCGaGGCU---------------ACU-GCUGU-----UCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 33767 0.67 0.804059
Target:  5'- -cCGGCUCgGAUaagcccGGCGGCAAGgaGGCCc -3'
miRNA:   3'- cuGCCGAGgCUA------CUGCUGUUC--CCGGu -5'
19741 5' -57.5 NC_004687.1 + 22038 0.67 0.804059
Target:  5'- uGCaGCUCUGGcgccUGAgCGACAuGGGCCGu -3'
miRNA:   3'- cUGcCGAGGCU----ACU-GCUGUuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 120936 0.67 0.80053
Target:  5'- aGCGGCcCCGGUGGgguccucugccgccUGACGAcgucggcGGGCCAa -3'
miRNA:   3'- cUGCCGaGGCUACU--------------GCUGUU-------CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 111858 0.67 0.795193
Target:  5'- uGGCgGGCcaagCCGGUGGCcuACuGGGGCCAu -3'
miRNA:   3'- -CUG-CCGa---GGCUACUGc-UGuUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 12123 0.67 0.795193
Target:  5'- aGGCGGUguagaucaggCCGGUGGCGAuCGAGGacuGCCc -3'
miRNA:   3'- -CUGCCGa---------GGCUACUGCU-GUUCC---CGGu -5'
19741 5' -57.5 NC_004687.1 + 100248 0.67 0.786183
Target:  5'- --gGGCUCCa---GCGuCAGGGGCCAg -3'
miRNA:   3'- cugCCGAGGcuacUGCuGUUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 116309 0.67 0.786183
Target:  5'- aGCGGUUCguCGu---CGACAAGGGCCu -3'
miRNA:   3'- cUGCCGAG--GCuacuGCUGUUCCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.