miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 3' -66.6 NC_004687.1 + 4475 0.66 0.451334
Target:  5'- uGGCCAGgauCUCCGgcuCGCCauaCCGGCCCUc- -3'
miRNA:   3'- cCCGGUC---GAGGC---GUGG---GGCCGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 106318 0.66 0.451334
Target:  5'- cGGUgAGCUCCucgGCGCCggGGCCCgAGu -3'
miRNA:   3'- cCCGgUCGAGG---CGUGGggCCGGGgUC- -5'
19742 3' -66.6 NC_004687.1 + 91467 0.66 0.451334
Target:  5'- uGGCCGGguugUCCGCACUCgGGUuggUCCAGu -3'
miRNA:   3'- cCCGGUCg---AGGCGUGGGgCCG---GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 61210 0.66 0.451334
Target:  5'- uGGGCCAGCUggagaCCGggcgggagguCACCCCGGa--CAGc -3'
miRNA:   3'- -CCCGGUCGA-----GGC----------GUGGGGCCgggGUC- -5'
19742 3' -66.6 NC_004687.1 + 61150 0.66 0.451334
Target:  5'- -cGCCAGCUgCGgGCUugggugggaugCUGGUCCCAGa -3'
miRNA:   3'- ccCGGUCGAgGCgUGG-----------GGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 43499 0.66 0.451334
Target:  5'- aGGUCGGCguu--GCCCUGGCCCCGa -3'
miRNA:   3'- cCCGGUCGaggcgUGGGGCCGGGGUc -5'
19742 3' -66.6 NC_004687.1 + 112922 0.66 0.451334
Target:  5'- cGGGCCGGUUCauggaGCGCaagaUGGUCCgGGg -3'
miRNA:   3'- -CCCGGUCGAGg----CGUGgg--GCCGGGgUC- -5'
19742 3' -66.6 NC_004687.1 + 64880 0.66 0.451334
Target:  5'- cGGCgGGCgacaucCCGCGCgUgGGCCUCGGc -3'
miRNA:   3'- cCCGgUCGa-----GGCGUGgGgCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 103254 0.66 0.451334
Target:  5'- cGGcGaCCAGgUCCGCuACgCCCGcGCCCUg- -3'
miRNA:   3'- -CC-C-GGUCgAGGCG-UG-GGGC-CGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 75298 0.66 0.442841
Target:  5'- aGGGCCuGGCaaagCCGUucACCaCCGGCCUg-- -3'
miRNA:   3'- -CCCGG-UCGa---GGCG--UGG-GGCCGGGguc -5'
19742 3' -66.6 NC_004687.1 + 17243 0.66 0.442841
Target:  5'- cGGUCAGCauUCCGgGCaCCUGGgCUCGGa -3'
miRNA:   3'- cCCGGUCG--AGGCgUG-GGGCCgGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 82738 0.66 0.442841
Target:  5'- uGGCCAuCaCCGCG-CCCGGCUUCAGc -3'
miRNA:   3'- cCCGGUcGaGGCGUgGGGCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 25371 0.66 0.442841
Target:  5'- cGGaGCaCGGCcuUCUGCagACCCUuGCCCCAGc -3'
miRNA:   3'- -CC-CG-GUCG--AGGCG--UGGGGcCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 109831 0.66 0.441997
Target:  5'- uGGCUGGCgCCGcCACCCgagcuggacaugaUGGCCUCGGc -3'
miRNA:   3'- cCCGGUCGaGGC-GUGGG-------------GCCGGGGUC- -5'
19742 3' -66.6 NC_004687.1 + 10019 0.66 0.441997
Target:  5'- uGGCCAGCUugCCGUcCUgguuguaCCGGCCCUg- -3'
miRNA:   3'- cCCGGUCGA--GGCGuGG-------GGCCGGGGuc -5'
19742 3' -66.6 NC_004687.1 + 114364 0.66 0.437789
Target:  5'- -uGCCAGCuucgUCUGCGCCCCcagccugcacgccgaGGaCCCCGa -3'
miRNA:   3'- ccCGGUCG----AGGCGUGGGG---------------CC-GGGGUc -5'
19742 3' -66.6 NC_004687.1 + 42329 0.66 0.434439
Target:  5'- cGGGCCAGCgggUCCaguaGCACCgaGGCgauguugcgcaCCCGGu -3'
miRNA:   3'- -CCCGGUCG---AGG----CGUGGggCCG-----------GGGUC- -5'
19742 3' -66.6 NC_004687.1 + 74944 0.66 0.434439
Target:  5'- uGGCCAGC-CCGCagcucaugGCCaugaCGGCCaaCCGGc -3'
miRNA:   3'- cCCGGUCGaGGCG--------UGGg---GCCGG--GGUC- -5'
19742 3' -66.6 NC_004687.1 + 2582 0.66 0.434439
Target:  5'- cGGUCuuGGCgaCCGCACCCCcggaGCCuCCGGg -3'
miRNA:   3'- cCCGG--UCGa-GGCGUGGGGc---CGG-GGUC- -5'
19742 3' -66.6 NC_004687.1 + 40667 0.66 0.434439
Target:  5'- uGGauguCCAGCacccaCCGCAcCCCCGGCgCCAu -3'
miRNA:   3'- -CCc---GGUCGa----GGCGU-GGGGCCGgGGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.