miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19742 5' -57.5 NC_004687.1 + 36788 0.66 0.838206
Target:  5'- aGCUGCCGGaguucgacgaGUGgGCCauGGGCAGUgaucaugUCCc -3'
miRNA:   3'- aCGACGGCC----------CAUgUGG--UCUGUCG-------AGG- -5'
19742 5' -57.5 NC_004687.1 + 38314 0.66 0.838206
Target:  5'- cGCUcgGCCucgcccgGGGUGaacCCGGcCAGCUCCu -3'
miRNA:   3'- aCGA--CGG-------CCCAUgu-GGUCuGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 113397 0.66 0.830806
Target:  5'- cUGaUGCUGGGUGCGgccCCGcACGGuCUCCg -3'
miRNA:   3'- -ACgACGGCCCAUGU---GGUcUGUC-GAGG- -5'
19742 5' -57.5 NC_004687.1 + 86329 0.66 0.830806
Target:  5'- cGgUGuCCGGGUugAuCCGGAU-GCUCUc -3'
miRNA:   3'- aCgAC-GGCCCAugU-GGUCUGuCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 144451 0.66 0.822414
Target:  5'- aGCUccgaGCCGGGgaugGCGCCGuGGCAGggCa -3'
miRNA:   3'- aCGA----CGGCCCa---UGUGGU-CUGUCgaGg -5'
19742 5' -57.5 NC_004687.1 + 83810 0.66 0.822414
Target:  5'- aUGCgGCUGGGcaGCguGCCGGucuGCAGUUCCc -3'
miRNA:   3'- -ACGaCGGCCCa-UG--UGGUC---UGUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 104835 0.66 0.822414
Target:  5'- cGUUGCgGGaauuUACGCCggAGACGGCgUCCc -3'
miRNA:   3'- aCGACGgCCc---AUGUGG--UCUGUCG-AGG- -5'
19742 5' -57.5 NC_004687.1 + 117884 0.66 0.822414
Target:  5'- gGCUGCCuGGUgauccACACCgacaAGACcauccGGUUCCu -3'
miRNA:   3'- aCGACGGcCCA-----UGUGG----UCUG-----UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 135840 0.66 0.822414
Target:  5'- cUGCgcgGCCcGGUAgGCCu-GCAGCUCa -3'
miRNA:   3'- -ACGa--CGGcCCAUgUGGucUGUCGAGg -5'
19742 5' -57.5 NC_004687.1 + 106857 0.66 0.821566
Target:  5'- gUGCUGCCGGGaugACggucgcgACCuuccACAGC-CCg -3'
miRNA:   3'- -ACGACGGCCCa--UG-------UGGuc--UGUCGaGG- -5'
19742 5' -57.5 NC_004687.1 + 61614 0.67 0.813852
Target:  5'- cGCgGUCGGuGUGgGCCAugGAaGGCUCCu -3'
miRNA:   3'- aCGaCGGCC-CAUgUGGU--CUgUCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 146419 0.67 0.813852
Target:  5'- cGCUGCCGacagcgccGGUAuCACCGGGC-GC-CUg -3'
miRNA:   3'- aCGACGGC--------CCAU-GUGGUCUGuCGaGG- -5'
19742 5' -57.5 NC_004687.1 + 115607 0.67 0.813852
Target:  5'- gUGCUGCUGGccgagaacaACACCGGGCuGCgcaaCCu -3'
miRNA:   3'- -ACGACGGCCca-------UGUGGUCUGuCGa---GG- -5'
19742 5' -57.5 NC_004687.1 + 12734 0.67 0.813852
Target:  5'- cGCcaacgGCUGGGUccGCACCgacgAGugGGaCUCCc -3'
miRNA:   3'- aCGa----CGGCCCA--UGUGG----UCugUC-GAGG- -5'
19742 5' -57.5 NC_004687.1 + 116401 0.67 0.813852
Target:  5'- gGC-GCCGGGgcCACCGGAgGaccGC-CCa -3'
miRNA:   3'- aCGaCGGCCCauGUGGUCUgU---CGaGG- -5'
19742 5' -57.5 NC_004687.1 + 44770 0.67 0.808636
Target:  5'- gGCcaGCCGGGcaacaacaccccggcUGCGCCGGguGCGGCcCCg -3'
miRNA:   3'- aCGa-CGGCCC---------------AUGUGGUC--UGUCGaGG- -5'
19742 5' -57.5 NC_004687.1 + 10767 0.67 0.805128
Target:  5'- cGCUGUCGuGGUACuggauggccaGCCGgucGACgAGCUCUu -3'
miRNA:   3'- aCGACGGC-CCAUG----------UGGU---CUG-UCGAGG- -5'
19742 5' -57.5 NC_004687.1 + 98748 0.67 0.805128
Target:  5'- cGCUGuCCGGuGUcCGCCGGGCguugaGGUagUCCa -3'
miRNA:   3'- aCGAC-GGCC-CAuGUGGUCUG-----UCG--AGG- -5'
19742 5' -57.5 NC_004687.1 + 106321 0.67 0.805128
Target:  5'- gGCUGCCGaGUacuucgaccGCACCAGuCAGUggaUCUa -3'
miRNA:   3'- aCGACGGCcCA---------UGUGGUCuGUCG---AGG- -5'
19742 5' -57.5 NC_004687.1 + 140627 0.67 0.805128
Target:  5'- aUGCUGgCGGGggcgGCGgCGagagugaucaucGugAGCUCCu -3'
miRNA:   3'- -ACGACgGCCCa---UGUgGU------------CugUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.