miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19743 3' -53.4 NC_004687.1 + 134459 0.68 0.936693
Target:  5'- -cUCCUgGGUCGGUgucAGCCcGCUCaUGGc -3'
miRNA:   3'- gcAGGAaCUAGCCG---UCGGuUGAG-ACC- -5'
19743 3' -53.4 NC_004687.1 + 21578 0.68 0.935208
Target:  5'- uCGUCCcaGcgCGGCAGCCAguuccacgacagguGCUCg-- -3'
miRNA:   3'- -GCAGGaaCuaGCCGUCGGU--------------UGAGacc -5'
19743 3' -53.4 NC_004687.1 + 18715 0.68 0.931659
Target:  5'- gCGcUCCacgauggUGGUgGGCAGCCGguGCUCaUGGu -3'
miRNA:   3'- -GC-AGGa------ACUAgCCGUCGGU--UGAG-ACC- -5'
19743 3' -53.4 NC_004687.1 + 575 0.68 0.931659
Target:  5'- aGUCCcggaucGAUCGGCGGCaGGCUCa-- -3'
miRNA:   3'- gCAGGaa----CUAGCCGUCGgUUGAGacc -5'
19743 3' -53.4 NC_004687.1 + 80288 0.68 0.931659
Target:  5'- uGUCuCUcGGcUCGGCGGCgGGCccUCUGGa -3'
miRNA:   3'- gCAG-GAaCU-AGCCGUCGgUUG--AGACC- -5'
19743 3' -53.4 NC_004687.1 + 136483 0.68 0.931659
Target:  5'- -uUCCU-GGUCGGCuuGGCCGcucaggucCUCUGGa -3'
miRNA:   3'- gcAGGAaCUAGCCG--UCGGUu-------GAGACC- -5'
19743 3' -53.4 NC_004687.1 + 78729 0.68 0.931659
Target:  5'- aG-CCcaGAUCGGCAgGCCcuAugUCUGGg -3'
miRNA:   3'- gCaGGaaCUAGCCGU-CGG--UugAGACC- -5'
19743 3' -53.4 NC_004687.1 + 109218 0.68 0.92638
Target:  5'- aGUCCgccGGUgCGGaucucgugGGCCAGCUUUGGg -3'
miRNA:   3'- gCAGGaa-CUA-GCCg-------UCGGUUGAGACC- -5'
19743 3' -53.4 NC_004687.1 + 138793 0.68 0.920858
Target:  5'- cCGUCCUUGGcCGcacGCAGCC-GCUCcagGGc -3'
miRNA:   3'- -GCAGGAACUaGC---CGUCGGuUGAGa--CC- -5'
19743 3' -53.4 NC_004687.1 + 11245 0.68 0.915091
Target:  5'- gCGUCgUUGGUCGGCAGgCCGGgauagCUGc -3'
miRNA:   3'- -GCAGgAACUAGCCGUC-GGUUga---GACc -5'
19743 3' -53.4 NC_004687.1 + 97574 0.69 0.901553
Target:  5'- aGUCCUUGAgaucgcgccgcgCGGCAGCCucggcCUCg-- -3'
miRNA:   3'- gCAGGAACUa-----------GCCGUCGGuu---GAGacc -5'
19743 3' -53.4 NC_004687.1 + 140307 0.69 0.894351
Target:  5'- uCGUCCUgcUGAccgcucagucguccUCGGUGGCCAACggcCUGu -3'
miRNA:   3'- -GCAGGA--ACU--------------AGCCGUCGGUUGa--GACc -5'
19743 3' -53.4 NC_004687.1 + 22538 0.69 0.882665
Target:  5'- cCGUCgUUGAgauccaccaUCGGUGGCC-ACUCcGGg -3'
miRNA:   3'- -GCAGgAACU---------AGCCGUCGGuUGAGaCC- -5'
19743 3' -53.4 NC_004687.1 + 21552 0.7 0.860457
Target:  5'- cCGcCCggcGGUCGugagcGCGGCCAagGCUCUGGa -3'
miRNA:   3'- -GCaGGaa-CUAGC-----CGUCGGU--UGAGACC- -5'
19743 3' -53.4 NC_004687.1 + 131316 0.7 0.852625
Target:  5'- gCGUCCUUGAccuggCuGCGGaCCAGCUCguUGGc -3'
miRNA:   3'- -GCAGGAACUa----GcCGUC-GGUUGAG--ACC- -5'
19743 3' -53.4 NC_004687.1 + 121138 0.71 0.81933
Target:  5'- uCGUCCUgUGGcagcUCGGgGGCCuGCUCgGGg -3'
miRNA:   3'- -GCAGGA-ACU----AGCCgUCGGuUGAGaCC- -5'
19743 3' -53.4 NC_004687.1 + 119056 0.71 0.81933
Target:  5'- gGUCCUUGAgcgaGGgAGCCggUgCUGGu -3'
miRNA:   3'- gCAGGAACUag--CCgUCGGuuGaGACC- -5'
19743 3' -53.4 NC_004687.1 + 140035 0.72 0.78326
Target:  5'- gGUCCUc--UCGGCAGCCGACgUC-GGu -3'
miRNA:   3'- gCAGGAacuAGCCGUCGGUUG-AGaCC- -5'
19743 3' -53.4 NC_004687.1 + 128041 0.72 0.78326
Target:  5'- aCG-CCUgugcagGAUCGGCAGgCAACUCcaGGa -3'
miRNA:   3'- -GCaGGAa-----CUAGCCGUCgGUUGAGa-CC- -5'
19743 3' -53.4 NC_004687.1 + 13354 0.72 0.773873
Target:  5'- cCGUCCUcgucGAUCGGCgccacgccauuGGCCAcgGCgcgCUGGg -3'
miRNA:   3'- -GCAGGAa---CUAGCCG-----------UCGGU--UGa--GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.