miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19743 5' -62.3 NC_004687.1 + 65666 0.66 0.593105
Target:  5'- cACCCGgAG-GCuCGgaucaauCCG-GGCACCCGCa -3'
miRNA:   3'- -UGGGUgUCaCG-GC-------GGCaCCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 105255 0.66 0.584264
Target:  5'- gGCCgACAG-GCCGaaGggcacGGUGCCCGCu -3'
miRNA:   3'- -UGGgUGUCaCGGCggCa----CCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 23433 0.66 0.584264
Target:  5'- cUCCGCcuGcGCCGUCcaGGCGCCCGCu -3'
miRNA:   3'- uGGGUGu-CaCGGCGGcaCCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 74167 0.66 0.584264
Target:  5'- cACCCGgAcgccCCGCCGUGGCAgCgCGCg -3'
miRNA:   3'- -UGGGUgUcac-GGCGGCACCGUgG-GUG- -5'
19743 5' -62.3 NC_004687.1 + 73530 0.66 0.581323
Target:  5'- uGCCCAuguugagguggaauCGGUcGCCGCCGUaGCGCUCuaGCa -3'
miRNA:   3'- -UGGGU--------------GUCA-CGGCGGCAcCGUGGG--UG- -5'
19743 5' -62.3 NC_004687.1 + 85820 0.67 0.574471
Target:  5'- cUUCGCGGcUGCUcuGCCgGUGGCACCCuCg -3'
miRNA:   3'- uGGGUGUC-ACGG--CGG-CACCGUGGGuG- -5'
19743 5' -62.3 NC_004687.1 + 78584 0.67 0.574471
Target:  5'- uUCCGuCGGUucuGaCCGCCGgGGCGCCCGg -3'
miRNA:   3'- uGGGU-GUCA---C-GGCGGCaCCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 10702 0.67 0.574471
Target:  5'- uGCCCA-GGUGUCGuuGgggucGGCGCCCu- -3'
miRNA:   3'- -UGGGUgUCACGGCggCa----CCGUGGGug -5'
19743 5' -62.3 NC_004687.1 + 76989 0.67 0.574471
Target:  5'- uGCaCCACGGUGCCGuuGccGGU--CCACa -3'
miRNA:   3'- -UG-GGUGUCACGGCggCa-CCGugGGUG- -5'
19743 5' -62.3 NC_004687.1 + 76811 0.67 0.564717
Target:  5'- cGCCCAgaccCGGUGCCacgguGCCc-GGCGCCgCGCg -3'
miRNA:   3'- -UGGGU----GUCACGG-----CGGcaCCGUGG-GUG- -5'
19743 5' -62.3 NC_004687.1 + 88393 0.67 0.564717
Target:  5'- aACUgACGGUGgcgcgcgagaUCGCCGgucGGCACCCGg -3'
miRNA:   3'- -UGGgUGUCAC----------GGCGGCa--CCGUGGGUg -5'
19743 5' -62.3 NC_004687.1 + 77155 0.67 0.564717
Target:  5'- gACCCgaGCAGUcauagcugGCCGgaCCgGUGGCACCC-Ca -3'
miRNA:   3'- -UGGG--UGUCA--------CGGC--GG-CACCGUGGGuG- -5'
19743 5' -62.3 NC_004687.1 + 113226 0.67 0.564717
Target:  5'- cGCCCaACAGgagGCCuCCcaGGCGCUCACc -3'
miRNA:   3'- -UGGG-UGUCa--CGGcGGcaCCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 82175 0.67 0.561799
Target:  5'- gGCCCGC--UGCCGCCGgucaucGGCgagacgccgacguuGCCCAg -3'
miRNA:   3'- -UGGGUGucACGGCGGCa-----CCG--------------UGGGUg -5'
19743 5' -62.3 NC_004687.1 + 35121 0.67 0.555007
Target:  5'- cGCCCGCAccGgCGCCGcUGGagaaccaGCCCGCc -3'
miRNA:   3'- -UGGGUGUcaCgGCGGC-ACCg------UGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 92673 0.67 0.555007
Target:  5'- gUCCA-GGUGCCGUCG-GGCugCgGCg -3'
miRNA:   3'- uGGGUgUCACGGCGGCaCCGugGgUG- -5'
19743 5' -62.3 NC_004687.1 + 145860 0.67 0.549204
Target:  5'- uGCUCAgGGUGCCGaCCG-GGCGaccgaaaguggugaCCACg -3'
miRNA:   3'- -UGGGUgUCACGGC-GGCaCCGUg-------------GGUG- -5'
19743 5' -62.3 NC_004687.1 + 34834 0.67 0.545346
Target:  5'- gUCCACAgagcGUGCCGCCGgaGGuCAUCgACg -3'
miRNA:   3'- uGGGUGU----CACGGCGGCa-CC-GUGGgUG- -5'
19743 5' -62.3 NC_004687.1 + 23336 0.67 0.545346
Target:  5'- gGCCCuGCGG-GCCaaGCUG-GGCACCgACa -3'
miRNA:   3'- -UGGG-UGUCaCGG--CGGCaCCGUGGgUG- -5'
19743 5' -62.3 NC_004687.1 + 128820 0.67 0.545346
Target:  5'- gGCCCuGCAGcGUCGCC-UGGacaagGCCCGCa -3'
miRNA:   3'- -UGGG-UGUCaCGGCGGcACCg----UGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.