miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19744 3' -60.5 NC_004687.1 + 81674 0.67 0.612494
Target:  5'- cAGGUUauugccGCCGCGUCcgGUcgagcccUGGGUCUCg -3'
miRNA:   3'- -UCCAGc-----CGGUGCAGuaCG-------ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 68979 0.68 0.603513
Target:  5'- cGGUUGGCCGgGUCcaccUGCUGcGCCg- -3'
miRNA:   3'- uCCAGCCGGUgCAGu---ACGACcCGGag -5'
19744 3' -60.5 NC_004687.1 + 129218 0.68 0.603513
Target:  5'- -aGUCGGCCuugucgGCGUCGUaGCcgccgGuGGCCUCg -3'
miRNA:   3'- ucCAGCCGG------UGCAGUA-CGa----C-CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 93471 0.68 0.597535
Target:  5'- cGGagGGCCAgcCGUgAgccccggauggguccUGCUGGGCCUg -3'
miRNA:   3'- uCCagCCGGU--GCAgU---------------ACGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 20507 0.68 0.59256
Target:  5'- cGGUCGGCCAgGgccugcaUCAUGgacccGGCCUCg -3'
miRNA:   3'- uCCAGCCGGUgC-------AGUACgac--CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 66694 0.68 0.587591
Target:  5'- uGGUCGGCgGCGgCAUcuauuccggcggcgcGCgGGGCUUCu -3'
miRNA:   3'- uCCAGCCGgUGCaGUA---------------CGaCCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 3856 0.68 0.583622
Target:  5'- aAGGUCGGUgGcCGgggugGCUGGGCCc- -3'
miRNA:   3'- -UCCAGCCGgU-GCagua-CGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 70995 0.68 0.573723
Target:  5'- -cGUCGGCCuugaggaccGCGUCuggGCccgGGGUCUCg -3'
miRNA:   3'- ucCAGCCGG---------UGCAGua-CGa--CCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 124817 0.68 0.567803
Target:  5'- cAGGUCGGUCggcaucaucagguggGCGuugccggaggugUCcgGCUGGGCCg- -3'
miRNA:   3'- -UCCAGCCGG---------------UGC------------AGuaCGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 90207 0.68 0.554051
Target:  5'- cGGU-GGCCAUGaUGUGCUGGaagaagGCCUCg -3'
miRNA:   3'- uCCAgCCGGUGCaGUACGACC------CGGAG- -5'
19744 3' -60.5 NC_004687.1 + 56399 0.68 0.554051
Target:  5'- -cGUCGGCaguCGUCgGUGCgggUGGGCUUCg -3'
miRNA:   3'- ucCAGCCGgu-GCAG-UACG---ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 14983 0.69 0.544288
Target:  5'- uGGagGGCCGCGaagagaGCUGGGCCg- -3'
miRNA:   3'- uCCagCCGGUGCagua--CGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 14975 0.69 0.534582
Target:  5'- cGGUUGGCCAgGUCGgggucuucgGCgacGGCCUUg -3'
miRNA:   3'- uCCAGCCGGUgCAGUa--------CGac-CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 90591 0.69 0.496426
Target:  5'- uGGU-GGUCACGUCGUGCUccuuacGGGCuCUg -3'
miRNA:   3'- uCCAgCCGGUGCAGUACGA------CCCG-GAg -5'
19744 3' -60.5 NC_004687.1 + 81413 0.7 0.47781
Target:  5'- cGGGUUcagGGCCAg--CAUGCgggccUGGGCCUCg -3'
miRNA:   3'- -UCCAG---CCGGUgcaGUACG-----ACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 8503 0.7 0.47781
Target:  5'- aAGG-CGaGCCG-GUCAUGCUGGuGCCg- -3'
miRNA:   3'- -UCCaGC-CGGUgCAGUACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 105125 0.7 0.47781
Target:  5'- -aGUCGGCuucCACGUCGaaUGCUGGuGCCa- -3'
miRNA:   3'- ucCAGCCG---GUGCAGU--ACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 16096 0.7 0.476889
Target:  5'- cGGUUGGCCACGguguaugUCGUGgUcaGGGCCa- -3'
miRNA:   3'- uCCAGCCGGUGC-------AGUACgA--CCCGGag -5'
19744 3' -60.5 NC_004687.1 + 142459 0.7 0.46772
Target:  5'- uGGUcacccCGGCCuACGUCGcUGCUcaggacgcgcugcGGGCCUCc -3'
miRNA:   3'- uCCA-----GCCGG-UGCAGU-ACGA-------------CCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 102519 0.71 0.424174
Target:  5'- cGGGcgaUGGCCGCGauggccagcUCcUGCUGGGCCUg -3'
miRNA:   3'- -UCCa--GCCGGUGC---------AGuACGACCCGGAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.