miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19745 5' -56.8 NC_004687.1 + 57300 0.66 0.849267
Target:  5'- gUGGGcCCCUCGUCGguccAGGGCaC-CGACg -3'
miRNA:   3'- aACUUcGGGAGCAGC----UCCUG-GaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 69951 0.66 0.849267
Target:  5'- gUGAGGCCggauggucacCUCGUUGcGGGCCgagacCGGCg -3'
miRNA:   3'- aACUUCGG----------GAGCAGCuCCUGGa----GCUG- -5'
19745 5' -56.8 NC_004687.1 + 26377 0.66 0.849267
Target:  5'- aUUGggGUCCUCG-CGcaggcgauccAGGACCUCc-- -3'
miRNA:   3'- -AACuuCGGGAGCaGC----------UCCUGGAGcug -5'
19745 5' -56.8 NC_004687.1 + 125599 0.66 0.849267
Target:  5'- gUGAGGCCCUgGcCGAGGGCgC-CaGCa -3'
miRNA:   3'- aACUUCGGGAgCaGCUCCUG-GaGcUG- -5'
19745 5' -56.8 NC_004687.1 + 100248 0.66 0.849267
Target:  5'- aUG-AGCCUucucguucugaUCGUCGGGcGCCUUGACc -3'
miRNA:   3'- aACuUCGGG-----------AGCAGCUCcUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 5242 0.66 0.848472
Target:  5'- gUGAcccAGCCCUugggcacgaaccaCGUCucAGGAuCCUCGACg -3'
miRNA:   3'- aACU---UCGGGA-------------GCAGc-UCCU-GGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 142105 0.67 0.841234
Target:  5'- aUGAucgcGGUCCUCucaGUCucGGGCUUCGACg -3'
miRNA:   3'- aACU----UCGGGAG---CAGcuCCUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 67231 0.67 0.841234
Target:  5'- ----cGCCCgaccggCGUCGAGGGCaucuaugucUUCGACg -3'
miRNA:   3'- aacuuCGGGa-----GCAGCUCCUG---------GAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 114385 0.67 0.841234
Target:  5'- ---cAGCCUgcaCGcCGAGGACCcCGACu -3'
miRNA:   3'- aacuUCGGGa--GCaGCUCCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 17242 0.67 0.833012
Target:  5'- -cGGAGCCCaCGUUGAGGACggUGcCg -3'
miRNA:   3'- aaCUUCGGGaGCAGCUCCUGgaGCuG- -5'
19745 5' -56.8 NC_004687.1 + 48785 0.67 0.824608
Target:  5'- -cGggGCUCga--CGAGGACgUCGGCg -3'
miRNA:   3'- aaCuuCGGGagcaGCUCCUGgAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 83274 0.67 0.816028
Target:  5'- -cGggGUCCUCGUgcucuUGAGGcucggUCUCGACu -3'
miRNA:   3'- aaCuuCGGGAGCA-----GCUCCu----GGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 109142 0.67 0.816028
Target:  5'- cUGGAcuuGCCC--GUCGAGGGCCUCa-- -3'
miRNA:   3'- aACUU---CGGGagCAGCUCCUGGAGcug -5'
19745 5' -56.8 NC_004687.1 + 121068 0.67 0.807281
Target:  5'- --cAGGCCCaggaugUCGUCGAuGACCUcCGGCg -3'
miRNA:   3'- aacUUCGGG------AGCAGCUcCUGGA-GCUG- -5'
19745 5' -56.8 NC_004687.1 + 70728 0.67 0.807281
Target:  5'- cUG-AGCCCgaUCGUCG---GCCUCGACg -3'
miRNA:   3'- aACuUCGGG--AGCAGCuccUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 42220 0.67 0.798376
Target:  5'- cUGGAGCucgaCCUCGUCGAGGGucugcagauCgUCGAg -3'
miRNA:   3'- aACUUCG----GGAGCAGCUCCU---------GgAGCUg -5'
19745 5' -56.8 NC_004687.1 + 3091 0.67 0.798376
Target:  5'- -cGAAGCCUUCGagGuacauGGCCUCGAUc -3'
miRNA:   3'- aaCUUCGGGAGCagCuc---CUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 44285 0.67 0.798376
Target:  5'- -aGGAGCg--CGUCGAGGACauccgCGACg -3'
miRNA:   3'- aaCUUCGggaGCAGCUCCUGga---GCUG- -5'
19745 5' -56.8 NC_004687.1 + 128527 0.68 0.78932
Target:  5'- cUUGAGGUCCUCGUCGuacGGGGCgUaggUGAUc -3'
miRNA:   3'- -AACUUCGGGAGCAGC---UCCUGgA---GCUG- -5'
19745 5' -56.8 NC_004687.1 + 14237 0.68 0.78932
Target:  5'- -gGAAGCCaUgGcCGAGGACCUgGAa -3'
miRNA:   3'- aaCUUCGGgAgCaGCUCCUGGAgCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.