Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 131061 | 0.69 | 0.935892 |
Target: 5'- cCCAGCUCGUgggccCGGUcGG-GGUcGGUGAUg -3' miRNA: 3'- -GGUUGAGCA-----GCCA-CCaCUA-CCACUGu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 136854 | 0.69 | 0.930814 |
Target: 5'- gCAcCUgGUCGGUGGUGcUGGaaGACGa -3' miRNA: 3'- gGUuGAgCAGCCACCACuACCa-CUGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 142542 | 0.69 | 0.930814 |
Target: 5'- uUCGGCUCcuguGUgGGUGaGUGGUGGUGGu- -3' miRNA: 3'- -GGUUGAG----CAgCCAC-CACUACCACUgu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 30033 | 0.69 | 0.928715 |
Target: 5'- aCCcGCUCGUcgaggggaaacgaaCGGUccuggucGGUGAUGGUGAg- -3' miRNA: 3'- -GGuUGAGCA--------------GCCA-------CCACUACCACUgu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 113080 | 0.7 | 0.914115 |
Target: 5'- cCgGGCUCGcUGGUGGUGGUGGg---- -3' miRNA: 3'- -GgUUGAGCaGCCACCACUACCacugu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 29797 | 0.7 | 0.891201 |
Target: 5'- aCCAcCUCGUagcucgggucgagcaCGGUGGcGAUGGUGuCGa -3' miRNA: 3'- -GGUuGAGCA---------------GCCACCaCUACCACuGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 139909 | 0.7 | 0.888466 |
Target: 5'- -----aUGUCGGagaUGGUGAUGGUGAUg -3' miRNA: 3'- gguugaGCAGCC---ACCACUACCACUGu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 45522 | 0.7 | 0.888466 |
Target: 5'- gCAGCUCGUCagcggccagguuGGUGGUGAUcaaGGUcgGGCGc -3' miRNA: 3'- gGUUGAGCAG------------CCACCACUA---CCA--CUGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 71873 | 0.71 | 0.859132 |
Target: 5'- aCCAGgaCGUCGGUGGUGAUcugcuuuccGGccuUGACc -3' miRNA: 3'- -GGUUgaGCAGCCACCACUA---------CC---ACUGu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 48737 | 0.71 | 0.851259 |
Target: 5'- gCCAGCUCG-CG--GGUGAUGGcGACGa -3' miRNA: 3'- -GGUUGAGCaGCcaCCACUACCaCUGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 136142 | 0.72 | 0.843183 |
Target: 5'- uCC-ACUCGUCgugGGUGGccggggcGGUGGUGGCGa -3' miRNA: 3'- -GGuUGAGCAG---CCACCa------CUACCACUGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 92098 | 0.72 | 0.843183 |
Target: 5'- cCCAugUCG-CGGUGGUGcucgacGUGGUuGCGg -3' miRNA: 3'- -GGUugAGCaGCCACCAC------UACCAcUGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 142902 | 0.72 | 0.834911 |
Target: 5'- gUCAGCUCGgUGGUGGUcugGGUGAUg -3' miRNA: 3'- -GGUUGAGCaGCCACCAcuaCCACUGu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 114263 | 0.72 | 0.834074 |
Target: 5'- cUCGGCuUCGUCGGcaUGGUGAgucuggaUGGUGugGu -3' miRNA: 3'- -GGUUG-AGCAGCC--ACCACU-------ACCACugU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 79991 | 0.73 | 0.781604 |
Target: 5'- aCCAACgCcUCGGUGGUGAUGuGaUGACc -3' miRNA: 3'- -GGUUGaGcAGCCACCACUAC-C-ACUGu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 138538 | 0.73 | 0.781604 |
Target: 5'- cUCAcCUCGcUCGGUGGUcg-GGUGACGg -3' miRNA: 3'- -GGUuGAGC-AGCCACCAcuaCCACUGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 102654 | 0.73 | 0.772187 |
Target: 5'- aCCGcucCUCGUUGGUGGUGccGGUG-CGg -3' miRNA: 3'- -GGUu--GAGCAGCCACCACuaCCACuGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 45561 | 0.76 | 0.620879 |
Target: 5'- gCCAGCgacaUCGcCGGUGGUGugGGUGACGu -3' miRNA: 3'- -GGUUG----AGCaGCCACCACuaCCACUGU- -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 42776 | 0.76 | 0.610538 |
Target: 5'- aCGAC-CGUCGG-GGUGAUGuGUGGCc -3' miRNA: 3'- gGUUGaGCAGCCaCCACUAC-CACUGu -5' |
|||||||
19746 | 3' | -52.4 | NC_004687.1 | + | 40474 | 0.77 | 0.559227 |
Target: 5'- gCCGACgUCGUCguGGUcGGUGAUGGcGACAg -3' miRNA: 3'- -GGUUG-AGCAG--CCA-CCACUACCaCUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home