miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 5' -57.5 NC_004687.1 + 17675 0.66 0.876917
Target:  5'- cGGUccaccGUUCGGCACCGuCCGuccggucGCCGACc -3'
miRNA:   3'- -CCAca---CGAGCUGUGGC-GGC-------UGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 90676 0.66 0.87339
Target:  5'- cGGUGUGCUgagggaccggaccguUGuGCGCUGCUGcgacGCCGACc -3'
miRNA:   3'- -CCACACGA---------------GC-UGUGGCGGC----UGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 15393 0.66 0.87053
Target:  5'- cGGUGaaGUUgGGCACCGC--ACCGGCGg -3'
miRNA:   3'- -CCACa-CGAgCUGUGGCGgcUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 75331 0.66 0.87053
Target:  5'- aGGUGUugUCGACGuuGuuGAgcCCGACGu -3'
miRNA:   3'- -CCACAcgAGCUGUggCggCU--GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 85415 0.66 0.87053
Target:  5'- gGGUG-GCcgaCGGCACCgGCgUGACCGAUc -3'
miRNA:   3'- -CCACaCGa--GCUGUGG-CG-GCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 124246 0.66 0.87053
Target:  5'- aGGUcGUagUCGugACCGUCGACCuGCGg -3'
miRNA:   3'- -CCA-CAcgAGCugUGGCGGCUGGcUGU- -5'
19746 5' -57.5 NC_004687.1 + 155341 0.66 0.87053
Target:  5'- --gGUGCUgaGCcuGCCGCCGAUCGAUc -3'
miRNA:   3'- ccaCACGAgcUG--UGGCGGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 74382 0.66 0.87053
Target:  5'- cGGUcUGCUCGGCGCCGg-GGCCugGGCGc -3'
miRNA:   3'- -CCAcACGAGCUGUGGCggCUGG--CUGU- -5'
19746 5' -57.5 NC_004687.1 + 108187 0.66 0.86981
Target:  5'- uGGUGcucgucccagggcUGgUCGACguucgggcuguaGCCGCCcACCGACGa -3'
miRNA:   3'- -CCAC-------------ACgAGCUG------------UGGCGGcUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 30480 0.66 0.86324
Target:  5'- cGGUcUGC---ACACCGCCG-CCGACc -3'
miRNA:   3'- -CCAcACGagcUGUGGCGGCuGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 22742 0.66 0.86324
Target:  5'- ----cGCugUCGACGCC-CUGACCGGCGc -3'
miRNA:   3'- ccacaCG--AGCUGUGGcGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 7705 0.66 0.86324
Target:  5'- --cGUcCUCGuCGCCGUaucaGACCGGCAa -3'
miRNA:   3'- ccaCAcGAGCuGUGGCGg---CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 80992 0.66 0.86324
Target:  5'- ----gGCugUCGaACACCcgcacGCCGACCGACAa -3'
miRNA:   3'- ccacaCG--AGC-UGUGG-----CGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 155184 0.66 0.86324
Target:  5'- ---cUGCUUGugaGCGCaCGCUGACCGGCu -3'
miRNA:   3'- ccacACGAGC---UGUG-GCGGCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 19912 0.66 0.86324
Target:  5'- cGGgcgagGUGCagaugUGGCugCGCCuggaggccaaGACCGACGg -3'
miRNA:   3'- -CCa----CACGa----GCUGugGCGG----------CUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 38393 0.66 0.8625
Target:  5'- aGGUGUucaucgaGCUCGACggACCGgUGAUgGACu -3'
miRNA:   3'- -CCACA-------CGAGCUG--UGGCgGCUGgCUGu -5'
19746 5' -57.5 NC_004687.1 + 144365 0.66 0.85575
Target:  5'- cGGcgGUGCUCcuACuCCGCCG-CCGAUc -3'
miRNA:   3'- -CCa-CACGAGc-UGuGGCGGCuGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 26702 0.66 0.85575
Target:  5'- cGGcG-GCUaCGACGCCGacaaGGCCGACu -3'
miRNA:   3'- -CCaCaCGA-GCUGUGGCgg--CUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 147929 0.66 0.85575
Target:  5'- cGG-GUGCaaGAgCGCCGCCGucugcgcaaccCCGACAa -3'
miRNA:   3'- -CCaCACGagCU-GUGGCGGCu----------GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 115541 0.66 0.85575
Target:  5'- cGGUGgaUGCUCaAUAUCGCCGacaGCCGGgAg -3'
miRNA:   3'- -CCAC--ACGAGcUGUGGCGGC---UGGCUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.