miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 3' -57.6 NC_004687.1 + 53695 0.66 0.811453
Target:  5'- cAUCUGGccgauGAGcGCCACCGuGGUCGg- -3'
miRNA:   3'- -UGGACCuuu--UUC-CGGUGGC-CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 2940 0.66 0.811453
Target:  5'- cACCUGGG---AGGCCuucACCcGGUCGUa -3'
miRNA:   3'- -UGGACCUuuuUCCGG---UGGcCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 94845 0.66 0.807932
Target:  5'- cCCUGcucgcgcuGGCCACCGaGGCCGc- -3'
miRNA:   3'- uGGACcuuuuu--CCGGUGGC-CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 125428 0.66 0.802602
Target:  5'- cCCUGGAAGAGGGCgGuCUGuGGaCCGc- -3'
miRNA:   3'- uGGACCUUUUUCCGgU-GGC-CC-GGCaa -5'
19747 3' -57.6 NC_004687.1 + 154715 0.66 0.802602
Target:  5'- cACCUGGAccGGGacaaGUgGCgGGGCCGUg -3'
miRNA:   3'- -UGGACCUuuUUC----CGgUGgCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 14980 0.66 0.802602
Target:  5'- uCgUGGA---GGGCCgcgaagagaGCUGGGCCGUg -3'
miRNA:   3'- uGgACCUuuuUCCGG---------UGGCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 16443 0.66 0.799917
Target:  5'- cCCUGGAGAAgaucgacggcaccuGGGUCGCCcGGGugaCCGUc -3'
miRNA:   3'- uGGACCUUUU--------------UCCGGUGG-CCC---GGCAa -5'
19747 3' -57.6 NC_004687.1 + 20065 0.67 0.793597
Target:  5'- gAUgUGGgcGAuucgugagcugcAGGCCuACCGGGCCGc- -3'
miRNA:   3'- -UGgACCuuUU------------UCCGG-UGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 40426 0.67 0.793597
Target:  5'- cCCUGGAGGAcuaCCACUGGGuCCGg- -3'
miRNA:   3'- uGGACCUUUUuccGGUGGCCC-GGCaa -5'
19747 3' -57.6 NC_004687.1 + 115069 0.67 0.782599
Target:  5'- cACUUGGugugggugGAAGGGGCCcaggaacuauucCCGGGCCGg- -3'
miRNA:   3'- -UGGACC--------UUUUUCCGGu-----------GGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 48395 0.67 0.775157
Target:  5'- cGCgCUGGAu---GGCgAUCGGGUCGUc -3'
miRNA:   3'- -UG-GACCUuuuuCCGgUGGCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 36531 0.67 0.76574
Target:  5'- cCCUGGGu--GGGgCACCuGGCCGc- -3'
miRNA:   3'- uGGACCUuuuUCCgGUGGcCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 85515 0.67 0.76574
Target:  5'- gGCCUGGAucggcuGGgCGCCGGuGCCc-- -3'
miRNA:   3'- -UGGACCUuuuu--CCgGUGGCC-CGGcaa -5'
19747 3' -57.6 NC_004687.1 + 116435 0.67 0.76574
Target:  5'- cACCggcgggcGGggGcGGGCCACCGGcagcaggaucGCCGg- -3'
miRNA:   3'- -UGGa------CCuuUuUCCGGUGGCC----------CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 9286 0.67 0.764792
Target:  5'- gGCCUGGAAGGcagcgauggcguuGGG-CACCGGcGCCu-- -3'
miRNA:   3'- -UGGACCUUUU-------------UCCgGUGGCC-CGGcaa -5'
19747 3' -57.6 NC_004687.1 + 147849 0.67 0.760032
Target:  5'- uGCCgGGcAAGAGGCgCACCuucccgcacuggccgGGGCCGa- -3'
miRNA:   3'- -UGGaCCuUUUUCCG-GUGG---------------CCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 38890 0.67 0.755243
Target:  5'- cGCCgggucGGGAucAGGCCcgggaagACCGGGCgGUg -3'
miRNA:   3'- -UGGa----CCUUuuUCCGG-------UGGCCCGgCAa -5'
19747 3' -57.6 NC_004687.1 + 68683 0.67 0.746557
Target:  5'- gUCUGGAAGAucGCgucaCGCCGGGCCa-- -3'
miRNA:   3'- uGGACCUUUUucCG----GUGGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 1105 0.67 0.746557
Target:  5'- uGCUUGGucc-GGGCgC-CCGGGCCGa- -3'
miRNA:   3'- -UGGACCuuuuUCCG-GuGGCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 18760 0.68 0.73681
Target:  5'- -gCUGGGAuugguguAGGCCACCGGGaucucCCGc- -3'
miRNA:   3'- ugGACCUUuu-----UCCGGUGGCCC-----GGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.