miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 5' -53.6 NC_004687.1 + 24603 0.66 0.960189
Target:  5'- cGAGCUGGuccgcAgCCAGGucaaGGACgCCGUCg -3'
miRNA:   3'- aCUUGGCCu----UgGGUCU----UCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 107109 0.66 0.956458
Target:  5'- aGGACCuccuGGCCCAGguGGCcCCGUCc -3'
miRNA:   3'- aCUUGGcc--UUGGGUCuuCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 87703 0.66 0.956458
Target:  5'- -cGACCGGAGCCCcGAcc-CUCaCGUCc -3'
miRNA:   3'- acUUGGCCUUGGGuCUucuGAG-GCAG- -5'
19747 5' -53.6 NC_004687.1 + 48893 0.66 0.956458
Target:  5'- aUGAACCaGGGcccguCCCGGGcgccggugGGGCUCCG-Ca -3'
miRNA:   3'- -ACUUGG-CCUu----GGGUCU--------UCUGAGGCaG- -5'
19747 5' -53.6 NC_004687.1 + 95588 0.66 0.956458
Target:  5'- --cGCCGGGcucauaACCCGGAGGACg-CGUg -3'
miRNA:   3'- acuUGGCCU------UGGGUCUUCUGagGCAg -5'
19747 5' -53.6 NC_004687.1 + 36925 0.66 0.956458
Target:  5'- -cGACCGGuccuCCCGGA-GGCUUCGcCg -3'
miRNA:   3'- acUUGGCCuu--GGGUCUuCUGAGGCaG- -5'
19747 5' -53.6 NC_004687.1 + 138929 0.67 0.954109
Target:  5'- -uAACCGGAccucgcgcaucgccaGCCUGGAGGGC-CgCGUCg -3'
miRNA:   3'- acUUGGCCU---------------UGGGUCUUCUGaG-GCAG- -5'
19747 5' -53.6 NC_004687.1 + 14747 0.67 0.954109
Target:  5'- -uGGCCGGAAUCCGGcccauggcauccagcGGGGCgaugCCGUUg -3'
miRNA:   3'- acUUGGCCUUGGGUC---------------UUCUGa---GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 41511 0.67 0.952496
Target:  5'- aGAGCUGG-ACCCAGuccuGGCccuUCCaGUCg -3'
miRNA:   3'- aCUUGGCCuUGGGUCuu--CUG---AGG-CAG- -5'
19747 5' -53.6 NC_004687.1 + 154819 0.67 0.952496
Target:  5'- cGGcCCGGGcGCCCGGAccaagcAGACUCagGUCc -3'
miRNA:   3'- aCUuGGCCU-UGGGUCU------UCUGAGg-CAG- -5'
19747 5' -53.6 NC_004687.1 + 116490 0.67 0.952496
Target:  5'- cGGACCGGcagcGCCCGGggGcaGCaUCgGUUg -3'
miRNA:   3'- aCUUGGCCu---UGGGUCuuC--UG-AGgCAG- -5'
19747 5' -53.6 NC_004687.1 + 20868 0.67 0.952496
Target:  5'- cGcGCCGGGcccugGCCCGcgucGAGGACgCCGUUg -3'
miRNA:   3'- aCuUGGCCU-----UGGGU----CUUCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 113812 0.67 0.952087
Target:  5'- gGAACugCGGGGCCagguaguacaGGAAGucgaccaGCUCCGUCg -3'
miRNA:   3'- aCUUG--GCCUUGGg---------UCUUC-------UGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 117677 0.67 0.950007
Target:  5'- cGAGCUGGAGCCCAaguuucucgacGGcugcauggccaacccGGAgUUCGUCa -3'
miRNA:   3'- aCUUGGCCUUGGGU-----------CU---------------UCUgAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 18763 0.67 0.948299
Target:  5'- cGcGCCGGGcuGCCCugGGAGGACgacgaggucgcCCGUCu -3'
miRNA:   3'- aCuUGGCCU--UGGG--UCUUCUGa----------GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 67438 0.67 0.948299
Target:  5'- gGGACCGGu-CgCAGAuuuacgccGGACgCCGUCa -3'
miRNA:   3'- aCUUGGCCuuGgGUCU--------UCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 144030 0.67 0.943864
Target:  5'- uUGAugCGGGucugcGCCCAGGccuuGGCgUCGUCg -3'
miRNA:   3'- -ACUugGCCU-----UGGGUCUu---CUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 41315 0.67 0.943864
Target:  5'- aUGAACCGGcGCCCcuGGuAGGuCUugCCGUCc -3'
miRNA:   3'- -ACUUGGCCuUGGG--UC-UUCuGA--GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 74106 0.67 0.943864
Target:  5'- --cGCCGGAGCCguaguagguGAAGGCggugccgCCGUCg -3'
miRNA:   3'- acuUGGCCUUGGgu-------CUUCUGa------GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 62826 0.67 0.943864
Target:  5'- uUGAGCUGGAGCCCgccgguacGGAcGACUCg--- -3'
miRNA:   3'- -ACUUGGCCUUGGG--------UCUuCUGAGgcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.