Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19748 | 3' | -51 | NC_004687.1 | + | 83639 | 0.68 | 0.978005 |
Target: 5'- gGCAUCACCaacaAGGUCGAccUGUUcGUCAa -3' miRNA: 3'- gUGUAGUGG----UCUAGCU--ACAGcCAGUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 31419 | 0.68 | 0.977763 |
Target: 5'- gCACcUCGCCGGugagcucGUCGAUG-CGGUC-Ca -3' miRNA: 3'- -GUGuAGUGGUC-------UAGCUACaGCCAGuG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 66889 | 0.68 | 0.972783 |
Target: 5'- --gGUCACCGuggaGGUGUCGGUCAg -3' miRNA: 3'- gugUAGUGGUcuagCUACAGCCAGUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 150804 | 0.68 | 0.96986 |
Target: 5'- uCAUAgcUgGCCAGAUCGgcGUC-GUCACg -3' miRNA: 3'- -GUGU--AgUGGUCUAGCuaCAGcCAGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 74997 | 0.68 | 0.96986 |
Target: 5'- aACAUCGCCucGAcUCGGg--CGGUCACc -3' miRNA: 3'- gUGUAGUGGu-CU-AGCUacaGCCAGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 129319 | 0.69 | 0.966719 |
Target: 5'- uGCGUCGCgGGAaacgCGAUGccgcuggCGGUCAUg -3' miRNA: 3'- gUGUAGUGgUCUa---GCUACa------GCCAGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 28234 | 0.69 | 0.966719 |
Target: 5'- gGCggCGCCAGAUCGAgcUCGGcgaCACc -3' miRNA: 3'- gUGuaGUGGUCUAGCUacAGCCa--GUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 2218 | 0.69 | 0.963353 |
Target: 5'- cCGCGUCGCCGuaccCGAgGUCGGUgACg -3' miRNA: 3'- -GUGUAGUGGUcua-GCUaCAGCCAgUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 20000 | 0.69 | 0.955926 |
Target: 5'- uCACAUCGCgcugCGGGaUGGUGUCGGcgUCGCa -3' miRNA: 3'- -GUGUAGUG----GUCUaGCUACAGCC--AGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 16091 | 0.69 | 0.955926 |
Target: 5'- aACGUCGCCGGGaucaUCGAggcggCGGUCGg -3' miRNA: 3'- gUGUAGUGGUCU----AGCUaca--GCCAGUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 123203 | 0.69 | 0.951853 |
Target: 5'- aUACAUCACC-GAgcaCGGUGUCGaGaUCACc -3' miRNA: 3'- -GUGUAGUGGuCUa--GCUACAGC-C-AGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 9468 | 0.69 | 0.951853 |
Target: 5'- uGCGcCACCAGuccggCG-UGUCGGUCAUc -3' miRNA: 3'- gUGUaGUGGUCua---GCuACAGCCAGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 84319 | 0.69 | 0.951853 |
Target: 5'- uGC-UCGCCcucGUCGAUGUCGGUgagCACa -3' miRNA: 3'- gUGuAGUGGuc-UAGCUACAGCCA---GUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 1157 | 0.7 | 0.942971 |
Target: 5'- ----cCACCAGAcCGGUGUCGGUgAg -3' miRNA: 3'- guguaGUGGUCUaGCUACAGCCAgUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 85818 | 0.7 | 0.938154 |
Target: 5'- gAUGUCGCCcGAUCGAUGU-GGcCACc -3' miRNA: 3'- gUGUAGUGGuCUAGCUACAgCCaGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 101867 | 0.7 | 0.927215 |
Target: 5'- gACAUCACCGGAccgacccUCGAccgaGGUCACc -3' miRNA: 3'- gUGUAGUGGUCU-------AGCUacagCCAGUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 45567 | 0.7 | 0.922182 |
Target: 5'- gACAUCGCCGG--UGGUGUgGGUgACg -3' miRNA: 3'- gUGUAGUGGUCuaGCUACAgCCAgUG- -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 150247 | 0.71 | 0.903924 |
Target: 5'- aCGgGUCACgGGGaacagcUCGGUGUCGGUCu- -3' miRNA: 3'- -GUgUAGUGgUCU------AGCUACAGCCAGug -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 98391 | 0.71 | 0.903924 |
Target: 5'- gCGCGUgCGCCAGGuaugcagccugcUCGccAUGUCGGUCAa -3' miRNA: 3'- -GUGUA-GUGGUCU------------AGC--UACAGCCAGUg -5' |
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19748 | 3' | -51 | NC_004687.1 | + | 75933 | 0.71 | 0.897337 |
Target: 5'- uCACAUCACCAccGAggcguuggugUCGAgGUCGGUCu- -3' miRNA: 3'- -GUGUAGUGGU--CU----------AGCUaCAGCCAGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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