miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19748 5' -61.6 NC_004687.1 + 139234 0.66 0.65335
Target:  5'- cGUACGCcacaGCGCaguccgugAGCGACCUGuCCGa- -3'
miRNA:   3'- -CGUGCGag--CGCG--------UCGCUGGGC-GGCaa -5'
19748 5' -61.6 NC_004687.1 + 91027 0.66 0.65335
Target:  5'- cCGCGC-CGCGCcgaggcccacGCGcgggaugucGCCCGCCGUg -3'
miRNA:   3'- cGUGCGaGCGCGu---------CGC---------UGGGCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 73804 0.66 0.65335
Target:  5'- uCGCGCUaccgGCGCugccgccGCGACCgcUGCCGUUg -3'
miRNA:   3'- cGUGCGAg---CGCGu------CGCUGG--GCGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 25661 0.66 0.65335
Target:  5'- -aGCGUUgGUGUAGUagGugCCGCCGUc -3'
miRNA:   3'- cgUGCGAgCGCGUCG--CugGGCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 123668 0.66 0.65335
Target:  5'- uGCAC-CUCGUGCAGgucgaugGGCUCGCUGUc -3'
miRNA:   3'- -CGUGcGAGCGCGUCg------CUGGGCGGCAa -5'
19748 5' -61.6 NC_004687.1 + 151719 0.66 0.65335
Target:  5'- aGCACagaGCUgUGcCGCAGCucGGCCCGCCa-- -3'
miRNA:   3'- -CGUG---CGA-GC-GCGUCG--CUGGGCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 7053 0.66 0.651375
Target:  5'- -uGCGCUCcagagugGCGCGguucugcGCGGCCCGCuCGg- -3'
miRNA:   3'- cgUGCGAG-------CGCGU-------CGCUGGGCG-GCaa -5'
19748 5' -61.6 NC_004687.1 + 65820 0.66 0.650388
Target:  5'- aCGCGCUgCGCGCAGgcgggugggaacgaUGACCgaGCCGa- -3'
miRNA:   3'- cGUGCGA-GCGCGUC--------------GCUGGg-CGGCaa -5'
19748 5' -61.6 NC_004687.1 + 102196 0.66 0.643471
Target:  5'- -gACGUcccggaaGCGCAGCGGCgagCCGCCGa- -3'
miRNA:   3'- cgUGCGag-----CGCGUCGCUG---GGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 101091 0.66 0.643471
Target:  5'- gGCGCGCUgGcCGCAcacCGGacacuucacCCCGCCGUUc -3'
miRNA:   3'- -CGUGCGAgC-GCGUc--GCU---------GGGCGGCAA- -5'
19748 5' -61.6 NC_004687.1 + 135208 0.66 0.633583
Target:  5'- uGCGCGCUCgGCGCGaucGCGuucccggugcuCCCGCuCGg- -3'
miRNA:   3'- -CGUGCGAG-CGCGU---CGCu----------GGGCG-GCaa -5'
19748 5' -61.6 NC_004687.1 + 51689 0.66 0.633583
Target:  5'- -gACaGCUCGCGCcugcuGGCGAaCCCGCaggaGUa -3'
miRNA:   3'- cgUG-CGAGCGCG-----UCGCU-GGGCGg---CAa -5'
19748 5' -61.6 NC_004687.1 + 139663 0.66 0.633583
Target:  5'- cCACGCUUGCGggcaaGGcCGACCUGuCCGg- -3'
miRNA:   3'- cGUGCGAGCGCg----UC-GCUGGGC-GGCaa -5'
19748 5' -61.6 NC_004687.1 + 48995 0.66 0.633583
Target:  5'- uGCAguCGUUCGCGCcacccGCG-CCCGCCc-- -3'
miRNA:   3'- -CGU--GCGAGCGCGu----CGCuGGGCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 39630 0.67 0.623693
Target:  5'- gGCACcgGCcCGUcgGCAGaCGGCCCGCUGg- -3'
miRNA:   3'- -CGUG--CGaGCG--CGUC-GCUGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 131180 0.67 0.623693
Target:  5'- cGCuGCGUUCgGCGCGGuCGAgCCUGCCa-- -3'
miRNA:   3'- -CG-UGCGAG-CGCGUC-GCU-GGGCGGcaa -5'
19748 5' -61.6 NC_004687.1 + 6414 0.67 0.623693
Target:  5'- aCACGaccucCUUGCGCAGUugguccACCCGCCGg- -3'
miRNA:   3'- cGUGC-----GAGCGCGUCGc-----UGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 106880 0.67 0.623693
Target:  5'- -aGCG-UCGaCGCGGCGAUCUGCUGg- -3'
miRNA:   3'- cgUGCgAGC-GCGUCGCUGGGCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 63639 0.67 0.61381
Target:  5'- gGC-CGCUgGCGaCAGCGcGCUgGCCGg- -3'
miRNA:   3'- -CGuGCGAgCGC-GUCGC-UGGgCGGCaa -5'
19748 5' -61.6 NC_004687.1 + 25443 0.67 0.61381
Target:  5'- uGCGuCGC-CGUGCGuGCGACCUGCgGc- -3'
miRNA:   3'- -CGU-GCGaGCGCGU-CGCUGGGCGgCaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.