Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19749 | 3' | -56.3 | NC_004687.1 | + | 1265 | 0.75 | 0.44121 |
Target: 5'- cGCUCGCagCguaGCGcagCGCCACCAGgUCCa -3' miRNA: 3'- -UGAGCGa-Gaa-CGCa--GCGGUGGUC-AGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 2349 | 0.66 | 0.906745 |
Target: 5'- cAC-CGCUaucgUUGCGcaggucggccagCGCCGCCAGaUCCa -3' miRNA: 3'- -UGaGCGAg---AACGCa-----------GCGGUGGUC-AGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 4784 | 0.69 | 0.755952 |
Target: 5'- -gUCGaccagCUUGCGUCcgcugggucugGCCACaCAGUCCu -3' miRNA: 3'- ugAGCga---GAACGCAG-----------CGGUG-GUCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 6308 | 0.66 | 0.895356 |
Target: 5'- aGCUCGUcgCacaUGCGUCGCaCGCgAGUgCg -3' miRNA: 3'- -UGAGCGa-Ga--ACGCAGCG-GUGgUCAgG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 9448 | 0.77 | 0.326396 |
Target: 5'- -aUCGCcCUgguggGCGUaguugCGCCACCAGUCCg -3' miRNA: 3'- ugAGCGaGAa----CGCA-----GCGGUGGUCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 21611 | 0.71 | 0.626331 |
Target: 5'- uGCUCGUagccggacUCggUGUacuggCGCCACCAGUCCu -3' miRNA: 3'- -UGAGCG--------AGa-ACGca---GCGGUGGUCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 23564 | 0.7 | 0.697205 |
Target: 5'- gACUCGCggaugaUCUUGCGgCGCCgAUCGG-CCa -3' miRNA: 3'- -UGAGCG------AGAACGCaGCGG-UGGUCaGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 25771 | 0.72 | 0.595859 |
Target: 5'- cCUCGCUCUUGCccccGUCGCUcagGCCGcGcCCg -3' miRNA: 3'- uGAGCGAGAACG----CAGCGG---UGGU-CaGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 28433 | 0.67 | 0.859932 |
Target: 5'- --gCGCgagUUGCGcuaUCGCCGCCugguGUCCg -3' miRNA: 3'- ugaGCGag-AACGC---AGCGGUGGu---CAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 33943 | 0.71 | 0.65684 |
Target: 5'- gUUCGCUCUgcaGCuUCGCCGCCAccgCCu -3' miRNA: 3'- uGAGCGAGAa--CGcAGCGGUGGUca-GG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 35175 | 0.68 | 0.792174 |
Target: 5'- gGCUgCGgaagauaCUCUUGCGUC-CCucuuuacccacGCCAGUCCg -3' miRNA: 3'- -UGA-GC-------GAGAACGCAGcGG-----------UGGUCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 44196 | 0.7 | 0.694201 |
Target: 5'- ---aGCUCUUGCgGUCGCCGCgAcggcugcccaugauGUCCa -3' miRNA: 3'- ugagCGAGAACG-CAGCGGUGgU--------------CAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 53318 | 0.68 | 0.810813 |
Target: 5'- gGCUCggggaaaaGUUUUUGUGcCGCCGCCGGggcCCg -3' miRNA: 3'- -UGAG--------CGAGAACGCaGCGGUGGUCa--GG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 58637 | 0.67 | 0.874749 |
Target: 5'- cGCUgCGCuUCUUuCGUCGCCAUCGG-Ca -3' miRNA: 3'- -UGA-GCG-AGAAcGCAGCGGUGGUCaGg -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 61216 | 0.68 | 0.810813 |
Target: 5'- aACUCGCgccagUGCGUCgagacucucgGUCACCcaGGUCCc -3' miRNA: 3'- -UGAGCGaga--ACGCAG----------CGGUGG--UCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 61987 | 0.69 | 0.755952 |
Target: 5'- gACUCGCUUUacgacgUGC-UCGCCGUCGGUCa -3' miRNA: 3'- -UGAGCGAGA------ACGcAGCGGUGGUCAGg -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 66351 | 0.71 | 0.65684 |
Target: 5'- aGCUCGCUgUUgGCGUCGUagUACCGGacgCCc -3' miRNA: 3'- -UGAGCGAgAA-CGCAGCG--GUGGUCa--GG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 68899 | 0.66 | 0.907965 |
Target: 5'- uGCUCaGCggcagCUUGaaaGUCGCCGugauaacuUCGGUCCc -3' miRNA: 3'- -UGAG-CGa----GAACg--CAGCGGU--------GGUCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 69940 | 0.66 | 0.907965 |
Target: 5'- aGCUCGgUCUUGUGagGCCGgaUGGUCa -3' miRNA: 3'- -UGAGCgAGAACGCagCGGUg-GUCAGg -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 70347 | 0.66 | 0.907965 |
Target: 5'- ---gGCUCcgGCGUCGCCGCaCAG-Cg -3' miRNA: 3'- ugagCGAGaaCGCAGCGGUG-GUCaGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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