Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19749 | 3' | -56.3 | NC_004687.1 | + | 101989 | 0.68 | 0.802021 |
Target: 5'- -gUCGgUCUUGCG-CaCCGCCauGGUCCg -3' miRNA: 3'- ugAGCgAGAACGCaGcGGUGG--UCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 99276 | 0.68 | 0.793077 |
Target: 5'- uGC-CGUUCU--CGUCGCC-CCAGUCg -3' miRNA: 3'- -UGaGCGAGAacGCAGCGGuGGUCAGg -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 35175 | 0.68 | 0.792174 |
Target: 5'- gGCUgCGgaagauaCUCUUGCGUC-CCucuuuacccacGCCAGUCCg -3' miRNA: 3'- -UGA-GC-------GAGAACGCAGcGG-----------UGGUCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 85326 | 0.69 | 0.783989 |
Target: 5'- aGCg-GCUCUUcGUGcCGUCGCCGGUCg -3' miRNA: 3'- -UGagCGAGAA-CGCaGCGGUGGUCAGg -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 72868 | 0.69 | 0.774766 |
Target: 5'- -gUCGCUg-UGUG-CGCCGCCGGuaUCCg -3' miRNA: 3'- ugAGCGAgaACGCaGCGGUGGUC--AGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 127696 | 0.69 | 0.774766 |
Target: 5'- aGCUCGaUCUgGCGcCGCCAgCcGUCCu -3' miRNA: 3'- -UGAGCgAGAaCGCaGCGGUgGuCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 117150 | 0.69 | 0.774766 |
Target: 5'- aGCgCGCUggagGCGUaggCGCCACCGGUgCCg -3' miRNA: 3'- -UGaGCGAgaa-CGCA---GCGGUGGUCA-GG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 4784 | 0.69 | 0.755952 |
Target: 5'- -gUCGaccagCUUGCGUCcgcugggucugGCCACaCAGUCCu -3' miRNA: 3'- ugAGCga---GAACGCAG-----------CGGUG-GUCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 61987 | 0.69 | 0.755952 |
Target: 5'- gACUCGCUUUacgacgUGC-UCGCCGUCGGUCa -3' miRNA: 3'- -UGAGCGAGA------ACGcAGCGGUGGUCAGg -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 135103 | 0.69 | 0.736705 |
Target: 5'- -aUCGCUCUUGcCGUCGgCAucCCAGaUCUu -3' miRNA: 3'- ugAGCGAGAAC-GCAGCgGU--GGUC-AGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 106200 | 0.7 | 0.726942 |
Target: 5'- gACUUGCccgUCUUGCGcuUCaGCCACgAGUCg -3' miRNA: 3'- -UGAGCG---AGAACGC--AG-CGGUGgUCAGg -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 23564 | 0.7 | 0.697205 |
Target: 5'- gACUCGCggaugaUCUUGCGgCGCCgAUCGG-CCa -3' miRNA: 3'- -UGAGCG------AGAACGCaGCGG-UGGUCaGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 44196 | 0.7 | 0.694201 |
Target: 5'- ---aGCUCUUGCgGUCGCCGCgAcggcugcccaugauGUCCa -3' miRNA: 3'- ugagCGAGAACG-CAGCGGUGgU--------------CAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 116366 | 0.7 | 0.687173 |
Target: 5'- aGCUCGC-CgggGCGUUGCCcggcccggcgacGCCAGgcgCCg -3' miRNA: 3'- -UGAGCGaGaa-CGCAGCGG------------UGGUCa--GG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 66351 | 0.71 | 0.65684 |
Target: 5'- aGCUCGCUgUUgGCGUCGUagUACCGGacgCCc -3' miRNA: 3'- -UGAGCGAgAA-CGCAGCG--GUGGUCa--GG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 33943 | 0.71 | 0.65684 |
Target: 5'- gUUCGCUCUgcaGCuUCGCCGCCAccgCCu -3' miRNA: 3'- uGAGCGAGAa--CGcAGCGGUGGUca-GG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 88779 | 0.71 | 0.636507 |
Target: 5'- gGCUCGgUCUgcaGCGUCcgcuCCACCGGgugCCa -3' miRNA: 3'- -UGAGCgAGAa--CGCAGc---GGUGGUCa--GG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 21611 | 0.71 | 0.626331 |
Target: 5'- uGCUCGUagccggacUCggUGUacuggCGCCACCAGUCCu -3' miRNA: 3'- -UGAGCG--------AGa-ACGca---GCGGUGGUCAGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 25771 | 0.72 | 0.595859 |
Target: 5'- cCUCGCUCUUGCccccGUCGCUcagGCCGcGcCCg -3' miRNA: 3'- uGAGCGAGAACG----CAGCGG---UGGU-CaGG- -5' |
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19749 | 3' | -56.3 | NC_004687.1 | + | 74656 | 0.74 | 0.459406 |
Target: 5'- aGCUCGaaggugGCGUUGCCACCGgcGUCCg -3' miRNA: 3'- -UGAGCgagaa-CGCAGCGGUGGU--CAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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