miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19749 5' -62.1 NC_004687.1 + 125442 0.66 0.642846
Target:  5'- uGGuGGUCGGCGGCGGUGugcaGACcGUcCGUc -3'
miRNA:   3'- gCC-CCAGUCGCCGUCGC----CUG-CAcGCG- -5'
19749 5' -62.1 NC_004687.1 + 142005 0.66 0.642846
Target:  5'- aGGaGGUCcGCGacgaAGCGGGCGUGacuGCg -3'
miRNA:   3'- gCC-CCAGuCGCcg--UCGCCUGCACg--CG- -5'
19749 5' -62.1 NC_004687.1 + 112814 0.66 0.633098
Target:  5'- gCGGGaUgAGgaaGGCAGCGGccuCGUGCGa -3'
miRNA:   3'- -GCCCcAgUCg--CCGUCGCCu--GCACGCg -5'
19749 5' -62.1 NC_004687.1 + 147348 0.66 0.633098
Target:  5'- --cGGUcCGGCGGCGGCGGAa--GCGg -3'
miRNA:   3'- gccCCA-GUCGCCGUCGCCUgcaCGCg -5'
19749 5' -62.1 NC_004687.1 + 17473 0.67 0.62335
Target:  5'- uCGGGGUgucggcgucaCGGgcgcccacguCGGCAGCGGACagcaccacgGCGCc -3'
miRNA:   3'- -GCCCCA----------GUC----------GCCGUCGCCUGca-------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 111666 0.67 0.62335
Target:  5'- -uGGGcCuGUGGCAGaaccaGGACaUGCGCa -3'
miRNA:   3'- gcCCCaGuCGCCGUCg----CCUGcACGCG- -5'
19749 5' -62.1 NC_004687.1 + 142149 0.67 0.613607
Target:  5'- cCGGccacgugcaGGUCAGUccgaucaacgugGGCAGCcugaGCGUGCGCa -3'
miRNA:   3'- -GCC---------CCAGUCG------------CCGUCGcc--UGCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 84056 0.67 0.613607
Target:  5'- uGGcGUCGGCGuGguGCuGGAUGccGCGCg -3'
miRNA:   3'- gCCcCAGUCGC-CguCG-CCUGCa-CGCG- -5'
19749 5' -62.1 NC_004687.1 + 52566 0.67 0.610687
Target:  5'- cCGGaggcgaucaGGUgGGCGGCgacgucgagggcgaAGCGGACGUccuucuggcggGCGCc -3'
miRNA:   3'- -GCC---------CCAgUCGCCG--------------UCGCCUGCA-----------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 78461 0.67 0.603878
Target:  5'- aGGaGG-CGGCGGCGGUcgagcugguccGGGCacUGCGCa -3'
miRNA:   3'- gCC-CCaGUCGCCGUCG-----------CCUGc-ACGCG- -5'
19749 5' -62.1 NC_004687.1 + 6748 0.67 0.603878
Target:  5'- uCGGuGGUCAuGCGGC-GCGGGgcUGUG-GCc -3'
miRNA:   3'- -GCC-CCAGU-CGCCGuCGCCU--GCACgCG- -5'
19749 5' -62.1 NC_004687.1 + 52758 0.67 0.600962
Target:  5'- aGGGuGcUCAuuuuuguucuccuuGUGGUGGUGGugGUGCGUc -3'
miRNA:   3'- gCCC-C-AGU--------------CGCCGUCGCCugCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 139682 0.67 0.59999
Target:  5'- gGGGGUCcaGGCGGgcugggccaGGUGGGCGaaggccugucgcgGCGCa -3'
miRNA:   3'- gCCCCAG--UCGCCg--------UCGCCUGCa------------CGCG- -5'
19749 5' -62.1 NC_004687.1 + 81889 0.67 0.593197
Target:  5'- uCGGgcaucuuGGUCAGCGGaggcaagGGCGGcaACGgcgGCGCu -3'
miRNA:   3'- -GCC-------CCAGUCGCCg------UCGCC--UGCa--CGCG- -5'
19749 5' -62.1 NC_004687.1 + 4542 0.67 0.593197
Target:  5'- gCGGGGcCAGaaccugagcacCGGCaagccgaAGCGaGGCGUGCGg -3'
miRNA:   3'- -GCCCCaGUC-----------GCCG-------UCGC-CUGCACGCg -5'
19749 5' -62.1 NC_004687.1 + 8036 0.67 0.593197
Target:  5'- uGGGGUCGGgcuuguacuggauCGGCcccggccaguGCGGGaagGUGCGCc -3'
miRNA:   3'- gCCCCAGUC-------------GCCGu---------CGCCUg--CACGCG- -5'
19749 5' -62.1 NC_004687.1 + 17092 0.67 0.591258
Target:  5'- cCGGcGcCAGCGGaucgucacCGGCGGacgcaugacucgcgGCGUGCGCg -3'
miRNA:   3'- -GCCcCaGUCGCC--------GUCGCC--------------UGCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 27841 0.67 0.588352
Target:  5'- gCGGGGUCGGCGcgaccggguuGCccuuGCGGGCccgggccucguggaaGUcGCGCg -3'
miRNA:   3'- -GCCCCAGUCGC----------CGu---CGCCUG---------------CA-CGCG- -5'
19749 5' -62.1 NC_004687.1 + 13204 0.67 0.574827
Target:  5'- -aGGG-CGGCGagaGCAGCGu-CGUGCGCc -3'
miRNA:   3'- gcCCCaGUCGC---CGUCGCcuGCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 82109 0.67 0.574827
Target:  5'- aCGGcagcGGUCgcGGCGGCAGCGc-CGguaGCGCg -3'
miRNA:   3'- -GCC----CCAG--UCGCCGUCGCcuGCa--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.