Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19750 | 5' | -59.8 | NC_004687.1 | + | 5776 | 0.67 | 0.681481 |
Target: 5'- aUCAGauUGCCCuugcgaugguGACGCUUGCCGa- -3' miRNA: 3'- gAGUCccACGGGu---------CUGCGAACGGCcu -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 10489 | 0.67 | 0.67155 |
Target: 5'- -cCAGGGaGCCCAggauggcgauGAUGUUcGCCGGGa -3' miRNA: 3'- gaGUCCCaCGGGU----------CUGCGAaCGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 16488 | 0.71 | 0.439874 |
Target: 5'- gCUCAGGGUGUCCAG-CGCggacUGaUCGGc -3' miRNA: 3'- -GAGUCCCACGGGUCuGCGa---AC-GGCCu -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 16898 | 0.68 | 0.611599 |
Target: 5'- gCUCGGuguuGUGCcaCCAGAcCGuCUUGCCGGAc -3' miRNA: 3'- -GAGUCc---CACG--GGUCU-GC-GAACGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 19617 | 0.67 | 0.711005 |
Target: 5'- -gCGGcGG-GCCUGGACGUccuggGCCGGAa -3' miRNA: 3'- gaGUC-CCaCGGGUCUGCGaa---CGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 22246 | 0.66 | 0.758816 |
Target: 5'- cCUCGGGGUcGagCAGGCuguGCUUGCCGa- -3' miRNA: 3'- -GAGUCCCA-CggGUCUG---CGAACGGCcu -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 29995 | 0.7 | 0.503989 |
Target: 5'- cCUUGGGGaUGCCCAGGUGCUUGgCCaGGc -3' miRNA: 3'- -GAGUCCC-ACGGGUCUGCGAAC-GGcCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 41193 | 0.66 | 0.730382 |
Target: 5'- -aCuGGGUGgCCAGGCcagaGCccUGCCGGGu -3' miRNA: 3'- gaGuCCCACgGGUCUG----CGa-ACGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 43187 | 0.76 | 0.242762 |
Target: 5'- -gCGGGGgccgGUCUgggcgGGGCGCUUGCCGGAg -3' miRNA: 3'- gaGUCCCa---CGGG-----UCUGCGAACGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 43785 | 0.72 | 0.405385 |
Target: 5'- uCUCGGuGGUGCCCu--C-CUUGCCGGGc -3' miRNA: 3'- -GAGUC-CCACGGGucuGcGAACGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 47658 | 0.66 | 0.739953 |
Target: 5'- -cCAGGGUgugguagaGCCCAGACccgGCggUGUCGGc -3' miRNA: 3'- gaGUCCCA--------CGGGUCUG---CGa-ACGGCCu -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 48183 | 0.68 | 0.651606 |
Target: 5'- gUCGGGGcGCuCCAGACugucgaugaGCUUGCgGGc -3' miRNA: 3'- gAGUCCCaCG-GGUCUG---------CGAACGgCCu -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 48234 | 0.66 | 0.739953 |
Target: 5'- -gCGGGccacGUGgCCGGACGCcggGCCGGu -3' miRNA: 3'- gaGUCC----CACgGGUCUGCGaa-CGGCCu -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 58023 | 0.7 | 0.532695 |
Target: 5'- gUCGGGuGUGgCCGGACGC--GCCGaGAa -3' miRNA: 3'- gAGUCC-CACgGGUCUGCGaaCGGC-CU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 65474 | 0.68 | 0.621596 |
Target: 5'- -gCAGGaagcUGCCCgAGGCGCcgaGCCGGAu -3' miRNA: 3'- gaGUCCc---ACGGG-UCUGCGaa-CGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 75170 | 0.71 | 0.448755 |
Target: 5'- --gAGGGUGCCCGccuCGCccgggGCCGGAa -3' miRNA: 3'- gagUCCCACGGGUcu-GCGaa---CGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 78316 | 0.69 | 0.588672 |
Target: 5'- -cCAGGuGUGCagCAGGCGCUUGagggugcagcuggcCCGGAa -3' miRNA: 3'- gaGUCC-CACGg-GUCUGCGAAC--------------GGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 86166 | 0.66 | 0.71976 |
Target: 5'- uCUCGGGcaccccgGUGCUU-GACGCccUGCCGGAc -3' miRNA: 3'- -GAGUCC-------CACGGGuCUGCGa-ACGGCCU- -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 86875 | 0.66 | 0.758816 |
Target: 5'- aUCAGGGUGCUCAcuACGg-UGUCGGc -3' miRNA: 3'- gAGUCCCACGGGUc-UGCgaACGGCCu -5' |
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19750 | 5' | -59.8 | NC_004687.1 | + | 88325 | 0.69 | 0.591655 |
Target: 5'- cCUCGGGGU-CCCAGcCGCgaUGCCaGGu -3' miRNA: 3'- -GAGUCCCAcGGGUCuGCGa-ACGG-CCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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