miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19750 5' -59.8 NC_004687.1 + 101044 0.69 0.542396
Target:  5'- aUCAGG--GCCCGGGC-CaUGCCGGAg -3'
miRNA:   3'- gAGUCCcaCGGGUCUGcGaACGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 91766 0.69 0.542396
Target:  5'- -cCGGGGaacuggGCCCAGACGCgcauCCGGu -3'
miRNA:   3'- gaGUCCCa-----CGGGUCUGCGaac-GGCCu -5'
19750 5' -59.8 NC_004687.1 + 151618 0.69 0.542396
Target:  5'- -gCAGGcUGCgCCGGAC-CUUGCCGGu -3'
miRNA:   3'- gaGUCCcACG-GGUCUGcGAACGGCCu -5'
19750 5' -59.8 NC_004687.1 + 58023 0.7 0.532695
Target:  5'- gUCGGGuGUGgCCGGACGC--GCCGaGAa -3'
miRNA:   3'- gAGUCC-CACgGGUCUGCGaaCGGC-CU- -5'
19750 5' -59.8 NC_004687.1 + 133890 0.7 0.514441
Target:  5'- gCUCAGGcgccagagcugcagGCCCGGACGCggcgGCgGGAc -3'
miRNA:   3'- -GAGUCCca------------CGGGUCUGCGaa--CGgCCU- -5'
19750 5' -59.8 NC_004687.1 + 117537 0.7 0.513487
Target:  5'- ---cGGGUgGCCCAGGCGgUggGCCGGu -3'
miRNA:   3'- gaguCCCA-CGGGUCUGCgAa-CGGCCu -5'
19750 5' -59.8 NC_004687.1 + 29995 0.7 0.503989
Target:  5'- cCUUGGGGaUGCCCAGGUGCUUGgCCaGGc -3'
miRNA:   3'- -GAGUCCC-ACGGGUCUGCGAAC-GGcCU- -5'
19750 5' -59.8 NC_004687.1 + 101789 0.71 0.466808
Target:  5'- -aCAGGGUGCCC--ACGUc-GCCGGGg -3'
miRNA:   3'- gaGUCCCACGGGucUGCGaaCGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 75170 0.71 0.448755
Target:  5'- --gAGGGUGCCCGccuCGCccgggGCCGGAa -3'
miRNA:   3'- gagUCCCACGGGUcu-GCGaa---CGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 16488 0.71 0.439874
Target:  5'- gCUCAGGGUGUCCAG-CGCggacUGaUCGGc -3'
miRNA:   3'- -GAGUCCCACGGGUCuGCGa---AC-GGCCu -5'
19750 5' -59.8 NC_004687.1 + 43785 0.72 0.405385
Target:  5'- uCUCGGuGGUGCCCu--C-CUUGCCGGGc -3'
miRNA:   3'- -GAGUC-CCACGGGucuGcGAACGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 137859 0.73 0.372649
Target:  5'- gUUGGGGUGCUCGGuGCGCUcggugucgacggUGCCGGu -3'
miRNA:   3'- gAGUCCCACGGGUC-UGCGA------------ACGGCCu -5'
19750 5' -59.8 NC_004687.1 + 43187 0.76 0.242762
Target:  5'- -gCGGGGgccgGUCUgggcgGGGCGCUUGCCGGAg -3'
miRNA:   3'- gaGUCCCa---CGGG-----UCUGCGAACGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 121052 0.77 0.190916
Target:  5'- -cCAGGGUGCCCGGAgGCagGCCcaGGAu -3'
miRNA:   3'- gaGUCCCACGGGUCUgCGaaCGG--CCU- -5'
19750 5' -59.8 NC_004687.1 + 110588 0.78 0.18179
Target:  5'- -cCGGGGUGCCCccggucGGCGC-UGCCGGGu -3'
miRNA:   3'- gaGUCCCACGGGu-----CUGCGaACGGCCU- -5'
19750 5' -59.8 NC_004687.1 + 134521 1.08 0.001499
Target:  5'- gCUCAGGGUGCCCAGACGCUUGCCGGAc -3'
miRNA:   3'- -GAGUCCCACGGGUCUGCGAACGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.