miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 3' -63.3 NC_004687.1 + 147303 0.66 0.574452
Target:  5'- gAGGGUcgacccggUGC-GGCCUGGACuGCcaGGCGGu -3'
miRNA:   3'- gUCUCG--------ACGuCCGGGCCUG-CG--CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 119206 0.66 0.564869
Target:  5'- cCGGGGcCUGCGGGCCauCGGcguccuCGCGGUc- -3'
miRNA:   3'- -GUCUC-GACGUCCGG--GCCu-----GCGCCGcc -5'
19751 3' -63.3 NC_004687.1 + 139377 0.66 0.564869
Target:  5'- cCAGGGCagcggcGCGGGCCUGGGCGaaGGUc- -3'
miRNA:   3'- -GUCUCGa-----CGUCCGGGCCUGCg-CCGcc -5'
19751 3' -63.3 NC_004687.1 + 117526 0.66 0.564869
Target:  5'- gCGGGGCgccccgGguGGCCC--AgGCGGUGGg -3'
miRNA:   3'- -GUCUCGa-----CguCCGGGccUgCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 106901 0.66 0.564869
Target:  5'- uGGGGCggcaugGguGGCgCCgGGGCGgGcGCGGg -3'
miRNA:   3'- gUCUCGa-----CguCCG-GG-CCUGCgC-CGCC- -5'
19751 3' -63.3 NC_004687.1 + 1099 0.66 0.564869
Target:  5'- -uGAGuCUGCuuGGUCCGGGCGCccgGGCc- -3'
miRNA:   3'- guCUC-GACGu-CCGGGCCUGCG---CCGcc -5'
19751 3' -63.3 NC_004687.1 + 67068 0.66 0.564869
Target:  5'- cCAGcuGCUGCAGGCCuuCGGccuugauCGUGGUGa -3'
miRNA:   3'- -GUCu-CGACGUCCGG--GCCu------GCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 130803 0.66 0.564869
Target:  5'- gAGGcGCUGCAGGCagCC-GACuCGGUGGg -3'
miRNA:   3'- gUCU-CGACGUCCG--GGcCUGcGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 99890 0.66 0.564869
Target:  5'- aCAGAGCaacGC-GGUCCuaACGCGGUGGc -3'
miRNA:   3'- -GUCUCGa--CGuCCGGGccUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 116076 0.66 0.564869
Target:  5'- -cGAGgaGCGcGGCC---ACGCGGCGGa -3'
miRNA:   3'- guCUCgaCGU-CCGGgccUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 128863 0.66 0.564869
Target:  5'- ---cGcCUGCGGGCCCGGcUGCaacaGCGGa -3'
miRNA:   3'- gucuC-GACGUCCGGGCCuGCGc---CGCC- -5'
19751 3' -63.3 NC_004687.1 + 131218 0.66 0.564869
Target:  5'- ---cGCUGCuGGCCCuGGACGUcuCGGg -3'
miRNA:   3'- gucuCGACGuCCGGG-CCUGCGccGCC- -5'
19751 3' -63.3 NC_004687.1 + 43733 0.67 0.555327
Target:  5'- aAGGGCggugccuucGguGGCCuCGGugGCGGUc- -3'
miRNA:   3'- gUCUCGa--------CguCCGG-GCCugCGCCGcc -5'
19751 3' -63.3 NC_004687.1 + 110234 0.67 0.555327
Target:  5'- uCAGcGGCuccUGCGGGCCCGaAC-CGGCGa -3'
miRNA:   3'- -GUC-UCG---ACGUCCGGGCcUGcGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 69607 0.67 0.555327
Target:  5'- -cGGGCUGCGGGCgccgCCGGAgGCcaGGUa- -3'
miRNA:   3'- guCUCGACGUCCG----GGCCUgCG--CCGcc -5'
19751 3' -63.3 NC_004687.1 + 116372 0.67 0.555327
Target:  5'- cCGGGGCguUGCccGGCCCGGcgACGCcaGGCGc -3'
miRNA:   3'- -GUCUCG--ACGu-CCGGGCC--UGCG--CCGCc -5'
19751 3' -63.3 NC_004687.1 + 137834 0.67 0.545834
Target:  5'- uCAGGGCccgGCGGGCCUcGACGaGGuUGGg -3'
miRNA:   3'- -GUCUCGa--CGUCCGGGcCUGCgCC-GCC- -5'
19751 3' -63.3 NC_004687.1 + 89859 0.67 0.545834
Target:  5'- -cGGGaCU-CAGGUCUGuGGCGCGGCGa -3'
miRNA:   3'- guCUC-GAcGUCCGGGC-CUGCGCCGCc -5'
19751 3' -63.3 NC_004687.1 + 91810 0.67 0.536393
Target:  5'- cCAGAucGCuUGCccGGGUUCGGAUuCGGCGGa -3'
miRNA:   3'- -GUCU--CG-ACG--UCCGGGCCUGcGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 93483 0.67 0.536393
Target:  5'- uCGGAaccGCUGCAcGCCguUGGugGCGGUGa -3'
miRNA:   3'- -GUCU---CGACGUcCGG--GCCugCGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.