miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19752 3' -57.5 NC_004687.1 + 29111 0.66 0.832576
Target:  5'- cACGUG--AG-GCAUCG-GCCCGGGc -3'
miRNA:   3'- cUGCACcaUCuCGUAGCaCGGGCCCu -5'
19752 3' -57.5 NC_004687.1 + 5483 0.67 0.814923
Target:  5'- cGGCGUaccGUgcAGcAGCGUCGUggucccaGCCCGGGAu -3'
miRNA:   3'- -CUGCAc--CA--UC-UCGUAGCA-------CGGGCCCU- -5'
19752 3' -57.5 NC_004687.1 + 144007 0.67 0.814923
Target:  5'- cGACGuUGG-GGAGgGUCGUGCCguugaugCGGGu -3'
miRNA:   3'- -CUGC-ACCaUCUCgUAGCACGG-------GCCCu -5'
19752 3' -57.5 NC_004687.1 + 35610 0.67 0.807135
Target:  5'- cGugGUGGUGGcGCcgGUCgGUGCcgucgCCGGGGu -3'
miRNA:   3'- -CugCACCAUCuCG--UAG-CACG-----GGCCCU- -5'
19752 3' -57.5 NC_004687.1 + 6186 0.67 0.804511
Target:  5'- gGGCGUGGgguGGGUccugGUCGUgcgcgaccagaucgGCCCGGGc -3'
miRNA:   3'- -CUGCACCau-CUCG----UAGCA--------------CGGGCCCu -5'
19752 3' -57.5 NC_004687.1 + 75430 0.68 0.780301
Target:  5'- gGGCGUcGGUGuAGUacuuguugGUCGUGCCCucGGGAa -3'
miRNA:   3'- -CUGCA-CCAUcUCG--------UAGCACGGG--CCCU- -5'
19752 3' -57.5 NC_004687.1 + 144472 0.68 0.752301
Target:  5'- -cCGUGGcAGGGCAUCGUgGCCCa--- -3'
miRNA:   3'- cuGCACCaUCUCGUAGCA-CGGGcccu -5'
19752 3' -57.5 NC_004687.1 + 106576 0.68 0.742749
Target:  5'- cGGCGUGGaauGGCGg---GCCCGGGAg -3'
miRNA:   3'- -CUGCACCaucUCGUagcaCGGGCCCU- -5'
19752 3' -57.5 NC_004687.1 + 23082 0.7 0.633384
Target:  5'- cGGCGUGa-AGAGgAUCGUuucGCCUGGGAa -3'
miRNA:   3'- -CUGCACcaUCUCgUAGCA---CGGGCCCU- -5'
19752 3' -57.5 NC_004687.1 + 135867 0.7 0.633384
Target:  5'- uGCGUcuGGUGGAGCAgucCGagcuggGCCCGGGc -3'
miRNA:   3'- cUGCA--CCAUCUCGUa--GCa-----CGGGCCCu -5'
19752 3' -57.5 NC_004687.1 + 126930 0.72 0.5334
Target:  5'- cGGCGUGGUuGAGCAUgG-GCCCGugcGGGu -3'
miRNA:   3'- -CUGCACCAuCUCGUAgCaCGGGC---CCU- -5'
19752 3' -57.5 NC_004687.1 + 97676 0.73 0.476063
Target:  5'- --aGUGGUAGAGCGUUccucugguaugGgaaagGCCCGGGGu -3'
miRNA:   3'- cugCACCAUCUCGUAG-----------Ca----CGGGCCCU- -5'
19752 3' -57.5 NC_004687.1 + 7834 0.73 0.457631
Target:  5'- cGCGcGGUAGAGCAUCGagagcuUGCCCcgguccugcGGGAa -3'
miRNA:   3'- cUGCaCCAUCUCGUAGC------ACGGG---------CCCU- -5'
19752 3' -57.5 NC_004687.1 + 132799 1.08 0.002573
Target:  5'- gGACGUGGUAGAGCAUCGUGCCCGGGAc -3'
miRNA:   3'- -CUGCACCAUCUCGUAGCACGGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.