Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19752 | 5' | -51.3 | NC_004687.1 | + | 9231 | 0.66 | 0.987396 |
Target: 5'- -gUCCCGGGCugcGAGCGcAUCCgcuggggCUUCu -3' miRNA: 3'- aaAGGGUCCGc--UUUGC-UAGGa------GAAGu -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 29721 | 0.7 | 0.913456 |
Target: 5'- -cUCCCAgGGCGccaccuCGAUCgUCUUCGg -3' miRNA: 3'- aaAGGGU-CCGCuuu---GCUAGgAGAAGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 45005 | 0.66 | 0.990297 |
Target: 5'- cUUCgCGGGCGAcACGAUCaacaUCggCAc -3' miRNA: 3'- aAAGgGUCCGCUuUGCUAGg---AGaaGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 54258 | 0.73 | 0.765667 |
Target: 5'- -gUCCCAGGaCaAGGCGAUCgUCUUCu -3' miRNA: 3'- aaAGGGUCC-GcUUUGCUAGgAGAAGu -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 54935 | 0.7 | 0.913456 |
Target: 5'- -aUCCUguaAGGCGggGCGGgaccUCCUCUa-- -3' miRNA: 3'- aaAGGG---UCCGCuuUGCU----AGGAGAagu -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 58030 | 0.66 | 0.98892 |
Target: 5'- -gUCCCcGGCGggGCcaguGAUCUUCagCAu -3' miRNA: 3'- aaAGGGuCCGCuuUG----CUAGGAGaaGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 64140 | 0.71 | 0.871251 |
Target: 5'- -gUCCCGGGCGccGuugaggcgcucccAGCGGUCCUCcUCGg -3' miRNA: 3'- aaAGGGUCCGC--U-------------UUGCUAGGAGaAGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 69248 | 0.67 | 0.974637 |
Target: 5'- aUUgCCAggucGGCGGuguaGGUCCUCUUCGa -3' miRNA: 3'- aAAgGGU----CCGCUuug-CUAGGAGAAGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 73937 | 0.73 | 0.803086 |
Target: 5'- ---gCCAGGCGGugaacccGGCGAUCCUCggCAu -3' miRNA: 3'- aaagGGUCCGCU-------UUGCUAGGAGaaGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 80756 | 0.77 | 0.576997 |
Target: 5'- --cCCCGGGCGAGGCGGgcacCCUCUaCAu -3' miRNA: 3'- aaaGGGUCCGCUUUGCUa---GGAGAaGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 84920 | 0.69 | 0.940955 |
Target: 5'- --cCCCGGGCccaGAcGCGGUCCUCa--- -3' miRNA: 3'- aaaGGGUCCG---CUuUGCUAGGAGaagu -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 92619 | 0.68 | 0.95436 |
Target: 5'- --cCCCcGGCGGGAaGAUCgCUCUUCu -3' miRNA: 3'- aaaGGGuCCGCUUUgCUAG-GAGAAGu -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 92734 | 0.69 | 0.935975 |
Target: 5'- --gCCCAGGCGc-GCGGUCgUCUaCAg -3' miRNA: 3'- aaaGGGUCCGCuuUGCUAGgAGAaGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 93354 | 0.66 | 0.983869 |
Target: 5'- ---gCCAGGCGccgGAACGAcgCCUCgcgUCGa -3' miRNA: 3'- aaagGGUCCGC---UUUGCUa-GGAGa--AGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 98061 | 0.67 | 0.981847 |
Target: 5'- --cCCCGGagaacucgucacGCGGAACGAUCUUCU-CGg -3' miRNA: 3'- aaaGGGUC------------CGCUUUGCUAGGAGAaGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 101490 | 0.67 | 0.981847 |
Target: 5'- -cUCCaGGGCG--GCGAUCCUCg--- -3' miRNA: 3'- aaAGGgUCCGCuuUGCUAGGAGaagu -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 106541 | 0.66 | 0.98892 |
Target: 5'- -cUCCuCGGGCGGcguggucgaGAUGAaggCCUCUUCc -3' miRNA: 3'- aaAGG-GUCCGCU---------UUGCUa--GGAGAAGu -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 117467 | 0.67 | 0.981847 |
Target: 5'- -gUCCUGGGCGGcguugAGCGA--CUCUUCGg -3' miRNA: 3'- aaAGGGUCCGCU-----UUGCUagGAGAAGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 120353 | 0.67 | 0.97894 |
Target: 5'- --aUCCAGGcCGAcgccaaguucaccgAGCGGUCCggCUUCAg -3' miRNA: 3'- aaaGGGUCC-GCU--------------UUGCUAGGa-GAAGU- -5' |
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19752 | 5' | -51.3 | NC_004687.1 | + | 122112 | 0.7 | 0.907178 |
Target: 5'- --aCCgGGGCGucGCGGUCCUCagCGa -3' miRNA: 3'- aaaGGgUCCGCuuUGCUAGGAGaaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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