miRNA display CGI


Results 21 - 40 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 3' -62.1 NC_004687.1 + 137789 0.66 0.672015
Target:  5'- aCCGUGGuCGuGCUggCGGCGUGGCCGc- -3'
miRNA:   3'- gGGCGCU-GU-CGGa-GCCGCGCUGGCua -5'
19753 3' -62.1 NC_004687.1 + 95414 0.66 0.671046
Target:  5'- aCCCGCugacuguucaucGACAccggcGCCgUCGGCGCGcucaucuggucgaGCCGGUu -3'
miRNA:   3'- -GGGCG------------CUGU-----CGG-AGCCGCGC-------------UGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 107454 0.66 0.662312
Target:  5'- aCUGCGACGGgUcguggUCGuGCGgGACCGGg -3'
miRNA:   3'- gGGCGCUGUCgG-----AGC-CGCgCUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 86103 0.66 0.662312
Target:  5'- gCgGCGACGGCCUUGGUGaaggucACCGu- -3'
miRNA:   3'- gGgCGCUGUCGGAGCCGCgc----UGGCua -5'
19753 3' -62.1 NC_004687.1 + 61437 0.66 0.662312
Target:  5'- cCCCG-GGCAucuuGuCCgUCGGCGCcGACCGGa -3'
miRNA:   3'- -GGGCgCUGU----C-GG-AGCCGCG-CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 116610 0.66 0.652586
Target:  5'- gCCCGCGACcGCCUgGGCcuCGcCCa-- -3'
miRNA:   3'- -GGGCGCUGuCGGAgCCGc-GCuGGcua -5'
19753 3' -62.1 NC_004687.1 + 140482 0.66 0.652586
Target:  5'- gCCGuUGGCAuUCUCGGCGCGGaucUCGAUg -3'
miRNA:   3'- gGGC-GCUGUcGGAGCCGCGCU---GGCUA- -5'
19753 3' -62.1 NC_004687.1 + 88210 0.66 0.652586
Target:  5'- gCCgGUGGCAGCUU-GGCGCcgGACuCGAa -3'
miRNA:   3'- -GGgCGCUGUCGGAgCCGCG--CUG-GCUa -5'
19753 3' -62.1 NC_004687.1 + 33504 0.66 0.646743
Target:  5'- gUCUGCGAugugcuuggcaaacaCAGCCUCGGCGagcagggcguUGACCcGAg -3'
miRNA:   3'- -GGGCGCU---------------GUCGGAGCCGC----------GCUGG-CUa -5'
19753 3' -62.1 NC_004687.1 + 106988 0.66 0.642846
Target:  5'- gCCCGCGA-GGCCga-GCGCGAuCUGGUg -3'
miRNA:   3'- -GGGCGCUgUCGGagcCGCGCU-GGCUA- -5'
19753 3' -62.1 NC_004687.1 + 78635 0.66 0.642846
Target:  5'- uCCCGaccaccaaCGGCAGucCCUCGGCaGCGGCUGc- -3'
miRNA:   3'- -GGGC--------GCUGUC--GGAGCCG-CGCUGGCua -5'
19753 3' -62.1 NC_004687.1 + 89409 0.66 0.642846
Target:  5'- gCUGCG-CGG-CUCGGCGCgGugCGAc -3'
miRNA:   3'- gGGCGCuGUCgGAGCCGCG-CugGCUa -5'
19753 3' -62.1 NC_004687.1 + 49011 0.66 0.642846
Target:  5'- aCCCGCGcCcGCCcCGGCGCcACCc-- -3'
miRNA:   3'- -GGGCGCuGuCGGaGCCGCGcUGGcua -5'
19753 3' -62.1 NC_004687.1 + 87225 0.66 0.633098
Target:  5'- aCCgGCGccagGCuGGCC-CGGCGUGACgCGAUc -3'
miRNA:   3'- -GGgCGC----UG-UCGGaGCCGCGCUG-GCUA- -5'
19753 3' -62.1 NC_004687.1 + 78251 0.66 0.633098
Target:  5'- uCCCGCacGAC-GCCaUUGGCaGCGACCa-- -3'
miRNA:   3'- -GGGCG--CUGuCGG-AGCCG-CGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 31242 0.66 0.633098
Target:  5'- gCCGaCGACAcCCaCGGCGUgcuGACCGAg -3'
miRNA:   3'- gGGC-GCUGUcGGaGCCGCG---CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 21961 0.67 0.62335
Target:  5'- gUCGuCGACcuCCUCGGUGgGAUCGAUc -3'
miRNA:   3'- gGGC-GCUGucGGAGCCGCgCUGGCUA- -5'
19753 3' -62.1 NC_004687.1 + 128568 0.67 0.622375
Target:  5'- uCUCGCGGCGccuGCCaUUGGCGUagguccaguuguaGACCGAc -3'
miRNA:   3'- -GGGCGCUGU---CGG-AGCCGCG-------------CUGGCUa -5'
19753 3' -62.1 NC_004687.1 + 24053 0.67 0.622375
Target:  5'- cCUCGUgGGCAGCCUUacgggagagagggGGCGCGAUCa-- -3'
miRNA:   3'- -GGGCG-CUGUCGGAG-------------CCGCGCUGGcua -5'
19753 3' -62.1 NC_004687.1 + 116270 0.67 0.613607
Target:  5'- -aCGCuGCGGCCUucCGGCGCgcGAUCGAg -3'
miRNA:   3'- ggGCGcUGUCGGA--GCCGCG--CUGGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.