miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 5' -53.8 NC_004687.1 + 128383 0.67 0.931262
Target:  5'- cACGGCgaguaGCGGCAGCGGGuggaUGCGc- -3'
miRNA:   3'- -UGUUGa----CGUCGUCGCUCuag-ACGCac -5'
19753 5' -53.8 NC_004687.1 + 130040 1.09 0.003796
Target:  5'- gACAACUGCAGCAGCGAGAUCUGCGUGg -3'
miRNA:   3'- -UGUUGACGUCGUCGCUCUAGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 133561 0.71 0.769507
Target:  5'- -uGACUGCGGCAGCGuGGGcCUGCu-- -3'
miRNA:   3'- ugUUGACGUCGUCGC-UCUaGACGcac -5'
19753 5' -53.8 NC_004687.1 + 136271 0.67 0.914314
Target:  5'- uACAGCUuCAGUcaCGAGGUCgaggGCGUGg -3'
miRNA:   3'- -UGUUGAcGUCGucGCUCUAGa---CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 142830 0.66 0.954478
Target:  5'- cGCAGC-GCGGUguuGGCGAaguaGAUCcGCGUGc -3'
miRNA:   3'- -UGUUGaCGUCG---UCGCU----CUAGaCGCAC- -5'
19753 5' -53.8 NC_004687.1 + 143170 0.66 0.95033
Target:  5'- gACGG-UGCucacCGGCGGGGUCUcGCGUGg -3'
miRNA:   3'- -UGUUgACGuc--GUCGCUCUAGA-CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 144486 0.69 0.850267
Target:  5'- uACAACcGgGGCcacggcgacuucGGCGAGAUCUgggGCGUGg -3'
miRNA:   3'- -UGUUGaCgUCG------------UCGCUCUAGA---CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 147547 0.68 0.888215
Target:  5'- aGCAGgUGCAGCAGCGGGccaugaUGCuUGu -3'
miRNA:   3'- -UGUUgACGUCGUCGCUCuag---ACGcAC- -5'
19753 5' -53.8 NC_004687.1 + 148517 0.67 0.931262
Target:  5'- -uGACgcgcGCGGCGGCGcgcuuGGUCUGCGc- -3'
miRNA:   3'- ugUUGa---CGUCGUCGCu----CUAGACGCac -5'
19753 5' -53.8 NC_004687.1 + 153822 0.76 0.44403
Target:  5'- aACAGCaGCGGCAGCGAGAgcgGCGa- -3'
miRNA:   3'- -UGUUGaCGUCGUCGCUCUagaCGCac -5'
19753 5' -53.8 NC_004687.1 + 154661 0.66 0.95033
Target:  5'- gGC-GCUGCGcuacGCuGCGAGcGUCUGCGg- -3'
miRNA:   3'- -UGuUGACGU----CGuCGCUC-UAGACGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.