miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19753 5' -53.8 NC_004687.1 + 144486 0.69 0.850267
Target:  5'- uACAACcGgGGCcacggcgacuucGGCGAGAUCUgggGCGUGg -3'
miRNA:   3'- -UGUUGaCgUCG------------UCGCUCUAGA---CGCAC- -5'
19753 5' -53.8 NC_004687.1 + 83811 0.69 0.842023
Target:  5'- uGCGGCUG-GGCAGCGugccGGUCUGCa-- -3'
miRNA:   3'- -UGUUGACgUCGUCGCu---CUAGACGcac -5'
19753 5' -53.8 NC_004687.1 + 96538 0.69 0.831004
Target:  5'- gGCGAuCUGCAGCGGCGGGucgaagcucuccuuGUgaGCGUc -3'
miRNA:   3'- -UGUU-GACGUCGUCGCUC--------------UAgaCGCAc -5'
19753 5' -53.8 NC_004687.1 + 1745 0.7 0.816109
Target:  5'- gGCAGCUGgAGCgaugAGCGAcGAgUUGCGUGc -3'
miRNA:   3'- -UGUUGACgUCG----UCGCU-CUaGACGCAC- -5'
19753 5' -53.8 NC_004687.1 + 3249 0.7 0.816109
Target:  5'- aACAACUGCGGCAGCuug----GCGUGc -3'
miRNA:   3'- -UGUUGACGUCGUCGcucuagaCGCAC- -5'
19753 5' -53.8 NC_004687.1 + 133561 0.71 0.769507
Target:  5'- -uGACUGCGGCAGCGuGGGcCUGCu-- -3'
miRNA:   3'- ugUUGACGUCGUCGC-UCUaGACGcac -5'
19753 5' -53.8 NC_004687.1 + 52226 0.71 0.749891
Target:  5'- -----aGCAGCAGgGAGAUCUuCGUGa -3'
miRNA:   3'- uguugaCGUCGUCgCUCUAGAcGCAC- -5'
19753 5' -53.8 NC_004687.1 + 70511 0.73 0.657346
Target:  5'- uACAGCaGCAGCAGCGAGAUggcCaGCGc- -3'
miRNA:   3'- -UGUUGaCGUCGUCGCUCUA---GaCGCac -5'
19753 5' -53.8 NC_004687.1 + 153822 0.76 0.44403
Target:  5'- aACAGCaGCGGCAGCGAGAgcgGCGa- -3'
miRNA:   3'- -UGUUGaCGUCGUCGCUCUagaCGCac -5'
19753 5' -53.8 NC_004687.1 + 31492 0.78 0.356529
Target:  5'- cGCGcGCUGCAGCAGCGAGAcCUcGCGg- -3'
miRNA:   3'- -UGU-UGACGUCGUCGCUCUaGA-CGCac -5'
19753 5' -53.8 NC_004687.1 + 130040 1.09 0.003796
Target:  5'- gACAACUGCAGCAGCGAGAUCUGCGUGg -3'
miRNA:   3'- -UGUUGACGUCGUCGCUCUAGACGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.