miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19754 5' -51.2 NC_004687.1 + 84758 0.66 0.991959
Target:  5'- cUCGUGGUGccuUCGAUggucgagGUGAuGUCGCCg -3'
miRNA:   3'- cAGUACCGC---AGUUGa------CAUU-CAGCGGg -5'
19754 5' -51.2 NC_004687.1 + 30064 0.66 0.991959
Target:  5'- gGUCGgugauggugagcUGGCG-CGACUccucGUcgaccuugAGGUCGCCCa -3'
miRNA:   3'- -CAGU------------ACCGCaGUUGA----CA--------UUCAGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 143194 0.66 0.991959
Target:  5'- -gCGUGGCuacGUCGACacccGGGUCGCCa -3'
miRNA:   3'- caGUACCG---CAGUUGaca-UUCAGCGGg -5'
19754 5' -51.2 NC_004687.1 + 8352 0.66 0.991847
Target:  5'- aGUCAUGGCGUCcuugccgAACUGaucGAG-CGCa- -3'
miRNA:   3'- -CAGUACCGCAG-------UUGACa--UUCaGCGgg -5'
19754 5' -51.2 NC_004687.1 + 134919 0.66 0.991847
Target:  5'- aUCAccGGCGUCAACUGcuGGuagcgcggccucaUCGCCg -3'
miRNA:   3'- cAGUa-CCGCAGUUGACauUC-------------AGCGGg -5'
19754 5' -51.2 NC_004687.1 + 113223 0.66 0.991149
Target:  5'- cUCGUGGa-UCGGCUGaauggugcucucgguGUCGCCCg -3'
miRNA:   3'- cAGUACCgcAGUUGACauu------------CAGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 123169 0.66 0.990783
Target:  5'- cUCA-GGCGUgCGaacaugaggaucACUGUAacaGGUCGCUCa -3'
miRNA:   3'- cAGUaCCGCA-GU------------UGACAU---UCAGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 17472 0.66 0.989477
Target:  5'- aUCggGGUGUCGGC-GUcacGGG-CGCCCa -3'
miRNA:   3'- cAGuaCCGCAGUUGaCA---UUCaGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 25499 0.66 0.98803
Target:  5'- ----cGGCGUCuucAACcagUGgguGGUCGCCCa -3'
miRNA:   3'- caguaCCGCAG---UUG---ACau-UCAGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 155050 0.66 0.98803
Target:  5'- aUCGcGGUGUCuguuGCUGUGGGUCGg-- -3'
miRNA:   3'- cAGUaCCGCAGu---UGACAUUCAGCggg -5'
19754 5' -51.2 NC_004687.1 + 60697 0.67 0.986434
Target:  5'- ----cGGCGUCAGC-GUGAGcaguggcgacaUCGUCCu -3'
miRNA:   3'- caguaCCGCAGUUGaCAUUC-----------AGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 92102 0.67 0.986434
Target:  5'- uGUCgcgGUGGUGcUCGACgugGUugcGGUCGCCg -3'
miRNA:   3'- -CAG---UACCGC-AGUUGa--CAu--UCAGCGGg -5'
19754 5' -51.2 NC_004687.1 + 22629 0.67 0.984679
Target:  5'- cGUCGUcGGCGUaCGGCUc--GG-CGCCCa -3'
miRNA:   3'- -CAGUA-CCGCA-GUUGAcauUCaGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 111586 0.67 0.982757
Target:  5'- ----cGGCgGUCAACUGcGAGgCGUCCa -3'
miRNA:   3'- caguaCCG-CAGUUGACaUUCaGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 33618 0.67 0.982757
Target:  5'- gGUCAUGGUGgccCAcGgUGUGGG-CGCCUa -3'
miRNA:   3'- -CAGUACCGCa--GU-UgACAUUCaGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 15992 0.67 0.982757
Target:  5'- gGUCGUcGGCGUUGAggaUGUAGGa-GCCCu -3'
miRNA:   3'- -CAGUA-CCGCAGUUg--ACAUUCagCGGG- -5'
19754 5' -51.2 NC_004687.1 + 110785 0.67 0.980658
Target:  5'- -cCGUGGCGUCGgucgcgccGCUGgugcucgUGCCCg -3'
miRNA:   3'- caGUACCGCAGU--------UGACauuca--GCGGG- -5'
19754 5' -51.2 NC_004687.1 + 118179 0.68 0.975897
Target:  5'- -gCAUGGCGaUCuGCaUGUuggagccgAAGUUGCCCu -3'
miRNA:   3'- caGUACCGC-AGuUG-ACA--------UUCAGCGGG- -5'
19754 5' -51.2 NC_004687.1 + 20879 0.68 0.975897
Target:  5'- aUCAUGGCcuuGUCGGCccgGUAGGU-GCCg -3'
miRNA:   3'- cAGUACCG---CAGUUGa--CAUUCAgCGGg -5'
19754 5' -51.2 NC_004687.1 + 96716 0.68 0.973218
Target:  5'- aUCGUGaG-GUCAGucucCUGUAGGUCGUCUa -3'
miRNA:   3'- cAGUAC-CgCAGUU----GACAUUCAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.