miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19755 3' -53.7 NC_004687.1 + 73352 0.66 0.982634
Target:  5'- uGGGUGGUGAucuCGuCGAcCGACaccagcaacucgcugGCGCUc -3'
miRNA:   3'- -CCUACCGCUuu-GCuGCU-GCUG---------------CGCGG- -5'
19755 3' -53.7 NC_004687.1 + 49468 0.66 0.982634
Target:  5'- cGGcAUGGUGAAcCGGCGguggccggucucgggAucgcCGACGCGCUc -3'
miRNA:   3'- -CC-UACCGCUUuGCUGC---------------U----GCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 8183 0.66 0.981844
Target:  5'- cGGUGGCGGAAgccucuuccuCGuCGAUGuccuggcuggcuGCGCGCUc -3'
miRNA:   3'- cCUACCGCUUU----------GCuGCUGC------------UGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 65833 0.66 0.981844
Target:  5'- ---aGGCGGGugGgaACGAUGACcgaGCCg -3'
miRNA:   3'- ccuaCCGCUUugC--UGCUGCUGcg-CGG- -5'
19755 3' -53.7 NC_004687.1 + 4181 0.66 0.981844
Target:  5'- uGGUGGCGAuuuc-CGGUGGCGgGCCg -3'
miRNA:   3'- cCUACCGCUuugcuGCUGCUGCgCGG- -5'
19755 3' -53.7 NC_004687.1 + 130822 0.66 0.981844
Target:  5'- uGGAccaggGGCcac-CGGCGugGAUcaGCGCCu -3'
miRNA:   3'- -CCUa----CCGcuuuGCUGCugCUG--CGCGG- -5'
19755 3' -53.7 NC_004687.1 + 6844 0.66 0.981844
Target:  5'- cGGUuGCGGAugGACGuauucaaugguCGucCGCGCCg -3'
miRNA:   3'- cCUAcCGCUUugCUGCu----------GCu-GCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 72100 0.66 0.981844
Target:  5'- ---cGGCGGGuACGACGAcuaCGACcCGCa -3'
miRNA:   3'- ccuaCCGCUU-UGCUGCU---GCUGcGCGg -5'
19755 3' -53.7 NC_004687.1 + 2800 0.66 0.981844
Target:  5'- ---cGGCGGcGACGGCuACGccuuugucuacuACGCGCCc -3'
miRNA:   3'- ccuaCCGCU-UUGCUGcUGC------------UGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 137310 0.66 0.981844
Target:  5'- gGGGUcaGGCGGucucguCGGgGACGAaccgcuCGCGCUg -3'
miRNA:   3'- -CCUA--CCGCUuu----GCUgCUGCU------GCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 43756 0.66 0.981844
Target:  5'- cGGUGGCGGucacGCGAUcagcaacuGGCGuuGCGCg -3'
miRNA:   3'- cCUACCGCUu---UGCUG--------CUGCugCGCGg -5'
19755 3' -53.7 NC_004687.1 + 110697 0.66 0.981844
Target:  5'- --cUGGCGc--CGACGACGGCcUGUCu -3'
miRNA:   3'- ccuACCGCuuuGCUGCUGCUGcGCGG- -5'
19755 3' -53.7 NC_004687.1 + 69958 0.66 0.981844
Target:  5'- cGGAUGGUcaccucGuuGCGGgcCGAgacCGGCGCGCg -3'
miRNA:   3'- -CCUACCG------CuuUGCU--GCU---GCUGCGCGg -5'
19755 3' -53.7 NC_004687.1 + 135323 0.66 0.981844
Target:  5'- cGGGUGGC---ACGcucGCGcaGCGACcCGCCg -3'
miRNA:   3'- -CCUACCGcuuUGC---UGC--UGCUGcGCGG- -5'
19755 3' -53.7 NC_004687.1 + 140630 0.66 0.981844
Target:  5'- --cUGGCgGggGCGGCGGCGAgaGUGaUCa -3'
miRNA:   3'- ccuACCG-CuuUGCUGCUGCUg-CGC-GG- -5'
19755 3' -53.7 NC_004687.1 + 144509 0.66 0.981844
Target:  5'- ---cGGCGAGAUcuggGGCGugGugGCucaCCa -3'
miRNA:   3'- ccuaCCGCUUUG----CUGCugCugCGc--GG- -5'
19755 3' -53.7 NC_004687.1 + 34507 0.66 0.981844
Target:  5'- cGGAcaGCGAcuCgGACGACGACGUcgacgaggacgGCCc -3'
miRNA:   3'- -CCUacCGCUuuG-CUGCUGCUGCG-----------CGG- -5'
19755 3' -53.7 NC_004687.1 + 149252 0.66 0.981844
Target:  5'- cGGAgGGUGAGcagccACuGACGGaccUGuCGCGCCg -3'
miRNA:   3'- -CCUaCCGCUU-----UG-CUGCU---GCuGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 36437 0.66 0.981643
Target:  5'- aGAUGGcCGAugggccgcuuaccGGCGACGA-GAgGCuGCCu -3'
miRNA:   3'- cCUACC-GCU-------------UUGCUGCUgCUgCG-CGG- -5'
19755 3' -53.7 NC_004687.1 + 79132 0.66 0.979754
Target:  5'- uGGgcGGCGgcACGGCGcAgGugG-GCCc -3'
miRNA:   3'- -CCuaCCGCuuUGCUGC-UgCugCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.