miRNA display CGI


Results 1 - 20 of 312 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19755 3' -53.7 NC_004687.1 + 115407 0.66 0.977489
Target:  5'- aGAUGGCcgcgcgggccaaGGAguGCGGCGAUGAgucUGuCGCCa -3'
miRNA:   3'- cCUACCG------------CUU--UGCUGCUGCU---GC-GCGG- -5'
19755 3' -53.7 NC_004687.1 + 154854 0.66 0.978416
Target:  5'- uGAUGGaCGccaagccggucuauGACGACGACGACaUGCa -3'
miRNA:   3'- cCUACC-GCu-------------UUGCUGCUGCUGcGCGg -5'
19755 3' -53.7 NC_004687.1 + 32079 0.66 0.972409
Target:  5'- --cUGGUGAGuaccACGACcGCGuGCGCGCg -3'
miRNA:   3'- ccuACCGCUU----UGCUGcUGC-UGCGCGg -5'
19755 3' -53.7 NC_004687.1 + 69376 0.66 0.972409
Target:  5'- cGAcUGGCaguAACGACccugugagaacuGGCGGCGCGUCc -3'
miRNA:   3'- cCU-ACCGcu-UUGCUG------------CUGCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 31491 0.66 0.975043
Target:  5'- uGGcAUGGCccGAcagaucccGAgGACGAgGACGCGUa -3'
miRNA:   3'- -CC-UACCG--CU--------UUgCUGCUgCUGCGCGg -5'
19755 3' -53.7 NC_004687.1 + 10716 0.66 0.972409
Target:  5'- -cGUGcGCGAGAagGGCGGCaACGUGCUg -3'
miRNA:   3'- ccUAC-CGCUUUg-CUGCUGcUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 112178 0.66 0.972409
Target:  5'- --cUGGUGGAuCG-CGugGA-GCGCCa -3'
miRNA:   3'- ccuACCGCUUuGCuGCugCUgCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 49945 0.66 0.977489
Target:  5'- cGGAUGGaCGuguUGACGuCGAgGCuCCg -3'
miRNA:   3'- -CCUACC-GCuuuGCUGCuGCUgCGcGG- -5'
19755 3' -53.7 NC_004687.1 + 14271 0.66 0.972409
Target:  5'- uGGcUGGUGcuGCG-CGAgCGGCGCGgCu -3'
miRNA:   3'- -CCuACCGCuuUGCuGCU-GCUGCGCgG- -5'
19755 3' -53.7 NC_004687.1 + 62908 0.66 0.972409
Target:  5'- uGGAUGcGCGGAcgcaucuCGAucucCGACGACGagGCUa -3'
miRNA:   3'- -CCUAC-CGCUUu------GCU----GCUGCUGCg-CGG- -5'
19755 3' -53.7 NC_004687.1 + 48675 0.66 0.975043
Target:  5'- ---aGGCcu-ACGGCGAgacCGAgGCGCCc -3'
miRNA:   3'- ccuaCCGcuuUGCUGCU---GCUgCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 60579 0.66 0.977489
Target:  5'- ------aGAAguACGuCGACGACGCGCUg -3'
miRNA:   3'- ccuaccgCUU--UGCuGCUGCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 141533 0.66 0.977489
Target:  5'- cGGGUGG-GAacugacccgcAugGAgGGCGACGCcuCCg -3'
miRNA:   3'- -CCUACCgCU----------UugCUgCUGCUGCGc-GG- -5'
19755 3' -53.7 NC_004687.1 + 48855 0.66 0.977253
Target:  5'- cGAUGGaCGu--CGACGGCGACcccggaccgcacaGCGUg -3'
miRNA:   3'- cCUACC-GCuuuGCUGCUGCUG-------------CGCGg -5'
19755 3' -53.7 NC_004687.1 + 11512 0.66 0.976044
Target:  5'- cGAUGGaCGAcGACGAgaucuucgacacgguCGAguCGAUGCGCUa -3'
miRNA:   3'- cCUACC-GCU-UUGCU---------------GCU--GCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 5466 0.66 0.979754
Target:  5'- aGAUGauCGaAGACGAgGACGGCGaCGUCu -3'
miRNA:   3'- cCUACc-GC-UUUGCUgCUGCUGC-GCGG- -5'
19755 3' -53.7 NC_004687.1 + 79132 0.66 0.979754
Target:  5'- uGGgcGGCGgcACGGCGcAgGugG-GCCc -3'
miRNA:   3'- -CCuaCCGCuuUGCUGC-UgCugCgCGG- -5'
19755 3' -53.7 NC_004687.1 + 31230 0.66 0.972409
Target:  5'- --cUGGUGAucaacgccGACGACacccACGGCGUGCUg -3'
miRNA:   3'- ccuACCGCU--------UUGCUGc---UGCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 64543 0.66 0.975043
Target:  5'- --cUGGUGGAAgGGCu-CGACcgGCGCCa -3'
miRNA:   3'- ccuACCGCUUUgCUGcuGCUG--CGCGG- -5'
19755 3' -53.7 NC_004687.1 + 149410 0.66 0.977489
Target:  5'- cGGAcuaCGAG--GACGAUGAgGCGCCg -3'
miRNA:   3'- -CCUaccGCUUugCUGCUGCUgCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.