miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19755 3' -53.7 NC_004687.1 + 90966 0.74 0.696391
Target:  5'- uGGGUgGGUGGAGCGGCGAgGACuagauguccuCGCCa -3'
miRNA:   3'- -CCUA-CCGCUUUGCUGCUgCUGc---------GCGG- -5'
19755 3' -53.7 NC_004687.1 + 55885 0.75 0.625753
Target:  5'- cGGAUGGCGcuACGGCGAUcagGACGUcaCCg -3'
miRNA:   3'- -CCUACCGCuuUGCUGCUG---CUGCGc-GG- -5'
19755 3' -53.7 NC_004687.1 + 28214 0.75 0.646031
Target:  5'- cGGG-GGCGAGcAgGACGGCuGGCGgCGCCa -3'
miRNA:   3'- -CCUaCCGCUU-UgCUGCUG-CUGC-GCGG- -5'
19755 3' -53.7 NC_004687.1 + 22766 0.75 0.656157
Target:  5'- -cGUGGuCGAGcuggccGCGACuGACGACGuCGCCa -3'
miRNA:   3'- ccUACC-GCUU------UGCUG-CUGCUGC-GCGG- -5'
19755 3' -53.7 NC_004687.1 + 107889 0.74 0.666264
Target:  5'- aGGUGGUGcu-CGACGAgguCGAcCGCGCCa -3'
miRNA:   3'- cCUACCGCuuuGCUGCU---GCU-GCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 111585 0.74 0.666264
Target:  5'- ---cGGUGAugaacAACGACGggcGCGGCGCGCUg -3'
miRNA:   3'- ccuaCCGCU-----UUGCUGC---UGCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 120079 0.74 0.676345
Target:  5'- ---aGGCuaucGGCGACGACGAgGCGCUg -3'
miRNA:   3'- ccuaCCGcu--UUGCUGCUGCUgCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 44685 0.74 0.676345
Target:  5'- aGGAUGGU----CGGCGGCuGACGCgGCCa -3'
miRNA:   3'- -CCUACCGcuuuGCUGCUG-CUGCG-CGG- -5'
19755 3' -53.7 NC_004687.1 + 116965 0.74 0.676345
Target:  5'- aGAUGGUGAAcauggugcGCGGgGugGGCGUGCa -3'
miRNA:   3'- cCUACCGCUU--------UGCUgCugCUGCGCGg -5'
19755 3' -53.7 NC_004687.1 + 57950 0.75 0.625753
Target:  5'- aGGGUGGCuGGGACGACGuCGAguCGgGCa -3'
miRNA:   3'- -CCUACCG-CUUUGCUGCuGCU--GCgCGg -5'
19755 3' -53.7 NC_004687.1 + 103237 0.75 0.615618
Target:  5'- aGGAagGGCGAGGCGAcCGGCGACcaggucCGCUa -3'
miRNA:   3'- -CCUa-CCGCUUUGCU-GCUGCUGc-----GCGG- -5'
19755 3' -53.7 NC_004687.1 + 30584 0.76 0.57527
Target:  5'- cGGGUGGUGAGACca--GCGAUGCGCUg -3'
miRNA:   3'- -CCUACCGCUUUGcugcUGCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 45037 0.79 0.406293
Target:  5'- cGGgcGGCGGAGCGACGACaccgGACGuCGaCCu -3'
miRNA:   3'- -CCuaCCGCUUUGCUGCUG----CUGC-GC-GG- -5'
19755 3' -53.7 NC_004687.1 + 88644 0.78 0.468648
Target:  5'- cGGUGGcCGAGGCGAU--CGACGCGCUg -3'
miRNA:   3'- cCUACC-GCUUUGCUGcuGCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 118123 0.78 0.496838
Target:  5'- ---cGGCGGggccaagaagGGCGugGugGACGCGCUg -3'
miRNA:   3'- ccuaCCGCU----------UUGCugCugCUGCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 20979 0.77 0.525767
Target:  5'- --cUGGCaGGAGCGGCGAUGAggcCGCGCUa -3'
miRNA:   3'- ccuACCG-CUUUGCUGCUGCU---GCGCGG- -5'
19755 3' -53.7 NC_004687.1 + 112904 0.76 0.555308
Target:  5'- ---gGGCc-GACGACGACGACGCggGCCg -3'
miRNA:   3'- ccuaCCGcuUUGCUGCUGCUGCG--CGG- -5'
19755 3' -53.7 NC_004687.1 + 60540 0.76 0.556301
Target:  5'- cGGUGGCcgcgccuaccguCGACGGCGACGCgGCCa -3'
miRNA:   3'- cCUACCGcuuu--------GCUGCUGCUGCG-CGG- -5'
19755 3' -53.7 NC_004687.1 + 81793 0.76 0.565266
Target:  5'- cGGAUGGgGugcCGACGGCGGCacCGCCu -3'
miRNA:   3'- -CCUACCgCuuuGCUGCUGCUGc-GCGG- -5'
19755 3' -53.7 NC_004687.1 + 129290 0.76 0.57527
Target:  5'- aGGAgacccaUGaGCGAccACGugGACGGCGCGUCc -3'
miRNA:   3'- -CCU------AC-CGCUu-UGCugCUGCUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.