miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19755 5' -56.3 NC_004687.1 + 61404 0.66 0.926685
Target:  5'- aGGGcgaccUCGUCAUCGGcacggcgaacaACuCCCCGGg -3'
miRNA:   3'- gCCCuuac-AGCAGUAGCC-----------UG-GGGGUC- -5'
19755 5' -56.3 NC_004687.1 + 20012 0.66 0.915727
Target:  5'- gCGGGAugGUGUCGgCGUCGcagacGACCaccacgCCCGGg -3'
miRNA:   3'- -GCCCU--UACAGCaGUAGC-----CUGG------GGGUC- -5'
19755 5' -56.3 NC_004687.1 + 123949 0.66 0.903849
Target:  5'- uCGGG-GUGcUCGUCGUCGcGAUagguaCCCCAc -3'
miRNA:   3'- -GCCCuUAC-AGCAGUAGC-CUG-----GGGGUc -5'
19755 5' -56.3 NC_004687.1 + 121370 0.66 0.903849
Target:  5'- gCGGGccgucgcUGUCGgUGUcCGGACCCUCGGg -3'
miRNA:   3'- -GCCCuu-----ACAGCaGUA-GCCUGGGGGUC- -5'
19755 5' -56.3 NC_004687.1 + 143176 0.66 0.903849
Target:  5'- gGGGAGUcccacUCGUCGgugCGGACCCagCCGu -3'
miRNA:   3'- gCCCUUAc----AGCAGUa--GCCUGGG--GGUc -5'
19755 5' -56.3 NC_004687.1 + 143471 0.66 0.897568
Target:  5'- uCGGGggUG-CGgggCAUCaGuCCUCCAGc -3'
miRNA:   3'- -GCCCuuACaGCa--GUAGcCuGGGGGUC- -5'
19755 5' -56.3 NC_004687.1 + 16105 0.66 0.897568
Target:  5'- aCGGuGuAUGUCGUgGUCaGGGCCaCCgAGg -3'
miRNA:   3'- -GCC-CuUACAGCAgUAG-CCUGG-GGgUC- -5'
19755 5' -56.3 NC_004687.1 + 86966 0.67 0.891063
Target:  5'- cCGGGAGUGguucaGUCAgccUCGGACCUacgacgaCGGc -3'
miRNA:   3'- -GCCCUUACag---CAGU---AGCCUGGGg------GUC- -5'
19755 5' -56.3 NC_004687.1 + 83337 0.67 0.884339
Target:  5'- gCGGGGcgagaucgggGUCGaUCGUCGGAUCUgCCGGg -3'
miRNA:   3'- -GCCCUua--------CAGC-AGUAGCCUGGG-GGUC- -5'
19755 5' -56.3 NC_004687.1 + 18443 0.67 0.884339
Target:  5'- gGGcGGAUcUCGUcCAUCGGugUCCCGa -3'
miRNA:   3'- gCC-CUUAcAGCA-GUAGCCugGGGGUc -5'
19755 5' -56.3 NC_004687.1 + 97342 0.67 0.880895
Target:  5'- gCGGGAccuggGUCGUCGgcgggguguugggCGGACCCggaagcuCCGGg -3'
miRNA:   3'- -GCCCUua---CAGCAGUa------------GCCUGGG-------GGUC- -5'
19755 5' -56.3 NC_004687.1 + 17467 0.67 0.870243
Target:  5'- uCGGGAucgggGUGUCGgcgUCA-CGGGCgCCCAc -3'
miRNA:   3'- -GCCCU-----UACAGC---AGUaGCCUGgGGGUc -5'
19755 5' -56.3 NC_004687.1 + 44476 0.67 0.862883
Target:  5'- uGGcuGggUGUCGgcg--GGACCCCCGGu -3'
miRNA:   3'- gCC--CuuACAGCaguagCCUGGGGGUC- -5'
19755 5' -56.3 NC_004687.1 + 9161 0.68 0.855321
Target:  5'- gGGGAGauUGUCGUCGUCacgcuuggGGGCCaugCUCAGc -3'
miRNA:   3'- gCCCUU--ACAGCAGUAG--------CCUGG---GGGUC- -5'
19755 5' -56.3 NC_004687.1 + 63449 0.68 0.847562
Target:  5'- aGGGcgucauUGUCGcCAUaCGGGUCCCCGGg -3'
miRNA:   3'- gCCCuu----ACAGCaGUA-GCCUGGGGGUC- -5'
19755 5' -56.3 NC_004687.1 + 145165 0.69 0.806068
Target:  5'- cCGGGAcgGUCGgcacgaCGUUGGugCCCg-- -3'
miRNA:   3'- -GCCCUuaCAGCa-----GUAGCCugGGGguc -5'
19755 5' -56.3 NC_004687.1 + 11632 0.69 0.787446
Target:  5'- aCGGGGAguggGUCGUCAa-GGACCggcugggcuucuaCCCGGu -3'
miRNA:   3'- -GCCCUUa---CAGCAGUagCCUGG-------------GGGUC- -5'
19755 5' -56.3 NC_004687.1 + 147276 0.69 0.779279
Target:  5'- gGGGcGUGUUGUCGUCGG-UCUgCGGg -3'
miRNA:   3'- gCCCuUACAGCAGUAGCCuGGGgGUC- -5'
19755 5' -56.3 NC_004687.1 + 63781 0.69 0.769155
Target:  5'- cCGaGGAGaccacccUGUCGUCGUCGGGCa-CCGGc -3'
miRNA:   3'- -GC-CCUU-------ACAGCAGUAGCCUGggGGUC- -5'
19755 5' -56.3 NC_004687.1 + 84566 0.7 0.750391
Target:  5'- aGGGAGUcUCGUCAUCgauGGACugaaccaccugagCCCCGGc -3'
miRNA:   3'- gCCCUUAcAGCAGUAG---CCUG-------------GGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.