miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19756 3' -59.6 NC_004687.1 + 65580 0.66 0.752301
Target:  5'- gAGCAUgaccucguacucCUGCuGGGUgCUGUCCGGGaUCu -3'
miRNA:   3'- -UUGUA------------GACGcCUCGgGACAGGCCC-AG- -5'
19756 3' -59.6 NC_004687.1 + 126734 0.66 0.752301
Target:  5'- gGGCAgCUGCcgucuGGAGCCgaugCUGUCCGaaccGGUCg -3'
miRNA:   3'- -UUGUaGACG-----CCUCGG----GACAGGC----CCAG- -5'
19756 3' -59.6 NC_004687.1 + 111512 0.66 0.75135
Target:  5'- --aGUCUGCuGGAucuugccGCCCgcaccGUCCGaGGUCa -3'
miRNA:   3'- uugUAGACG-CCU-------CGGGa----CAGGC-CCAG- -5'
19756 3' -59.6 NC_004687.1 + 119436 0.66 0.723371
Target:  5'- --gGUCgGCGaaGAGCUCUGggacgaCCGGGUCa -3'
miRNA:   3'- uugUAGaCGC--CUCGGGACa-----GGCCCAG- -5'
19756 3' -59.6 NC_004687.1 + 19610 0.66 0.723371
Target:  5'- gGACAUCgcgGCGG-GCCUggacGUCCuGGGcCg -3'
miRNA:   3'- -UUGUAGa--CGCCuCGGGa---CAGG-CCCaG- -5'
19756 3' -59.6 NC_004687.1 + 255 0.67 0.693752
Target:  5'- cGGC-UCgGCGGAcgaugaccauGCCCUGUCagcagaGGGUCc -3'
miRNA:   3'- -UUGuAGaCGCCU----------CGGGACAGg-----CCCAG- -5'
19756 3' -59.6 NC_004687.1 + 24675 0.67 0.67374
Target:  5'- uGACGagugGCGG-GCCCUGgCCGGuGUCg -3'
miRNA:   3'- -UUGUaga-CGCCuCGGGACaGGCC-CAG- -5'
19756 3' -59.6 NC_004687.1 + 111303 0.67 0.67374
Target:  5'- gGACGauugCUGCGGucGUUCaUGUUCGGGUCg -3'
miRNA:   3'- -UUGUa---GACGCCu-CGGG-ACAGGCCCAG- -5'
19756 3' -59.6 NC_004687.1 + 107005 0.67 0.67374
Target:  5'- gAACugcugCUGCGGAGCCCcaccggcGcCCGGGa- -3'
miRNA:   3'- -UUGua---GACGCCUCGGGa------CaGGCCCag -5'
19756 3' -59.6 NC_004687.1 + 108212 0.68 0.623273
Target:  5'- gAGCGcCUGCGG-GCCCUGguggaCCGGuUCg -3'
miRNA:   3'- -UUGUaGACGCCuCGGGACa----GGCCcAG- -5'
19756 3' -59.6 NC_004687.1 + 27144 0.68 0.593008
Target:  5'- uAGCGaaaugCUGCGGGGUCCUGgaacgCaggGGGUCg -3'
miRNA:   3'- -UUGUa----GACGCCUCGGGACa----Gg--CCCAG- -5'
19756 3' -59.6 NC_004687.1 + 99576 0.69 0.543208
Target:  5'- uGCggUUGUuccaguucGGAGCCCggcgcagGUCCGGGUCc -3'
miRNA:   3'- uUGuaGACG--------CCUCGGGa------CAGGCCCAG- -5'
19756 3' -59.6 NC_004687.1 + 39723 0.7 0.512055
Target:  5'- cAGCGUCcgGCGGAGUCCgacgacaaccaUCCGGGUg -3'
miRNA:   3'- -UUGUAGa-CGCCUCGGGac---------AGGCCCAg -5'
19756 3' -59.6 NC_004687.1 + 119262 0.7 0.485416
Target:  5'- cGGCGUCgGUGGGcuGCCCaGUgaCCGGGUCa -3'
miRNA:   3'- -UUGUAGaCGCCU--CGGGaCA--GGCCCAG- -5'
19756 3' -59.6 NC_004687.1 + 33248 0.7 0.476063
Target:  5'- gGAgGUCUGauaCGGAccGuCCUUGUCCGGGUCc -3'
miRNA:   3'- -UUgUAGAC---GCCU--C-GGGACAGGCCCAG- -5'
19756 3' -59.6 NC_004687.1 + 108125 0.75 0.26489
Target:  5'- aGGCGUcCUGCauGGCCUUGUCCGGGUUg -3'
miRNA:   3'- -UUGUA-GACGccUCGGGACAGGCCCAG- -5'
19756 3' -59.6 NC_004687.1 + 39197 0.79 0.154725
Target:  5'- gAGCAUCUGcCGGGGCCgCgaguggGUCCGGGUg -3'
miRNA:   3'- -UUGUAGAC-GCCUCGG-Ga-----CAGGCCCAg -5'
19756 3' -59.6 NC_004687.1 + 127659 1.07 0.001486
Target:  5'- gAACAUCUGCGGAGCCCUGUCCGGGUCg -3'
miRNA:   3'- -UUGUAGACGCCUCGGGACAGGCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.