miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19756 5' -61.3 NC_004687.1 + 19585 0.66 0.712944
Target:  5'- gCGAGCUUGAUCagucggUGGCcgaggacaucGCgGCgGGCCu -3'
miRNA:   3'- -GCUCGAGCUAG------ACCG----------CGgCGgUCGGc -5'
19756 5' -61.3 NC_004687.1 + 18118 0.66 0.712944
Target:  5'- gGAGCUguUGAgcgcGGCcacGCCGCCAGCaCGa -3'
miRNA:   3'- gCUCGA--GCUaga-CCG---CGGCGGUCG-GC- -5'
19756 5' -61.3 NC_004687.1 + 29567 0.66 0.712944
Target:  5'- cCGGGCUgG---UGGCGCCGUUggagcaccagAGCCGg -3'
miRNA:   3'- -GCUCGAgCuagACCGCGGCGG----------UCGGC- -5'
19756 5' -61.3 NC_004687.1 + 145276 0.66 0.707177
Target:  5'- uCGaAGCggCGAUCUcGGCGUuggccugagauucggCGCUGGCCGu -3'
miRNA:   3'- -GC-UCGa-GCUAGA-CCGCG---------------GCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 110564 0.66 0.703321
Target:  5'- gCGAGCUgaGcgC-GGUGuuGCUGGCCGg -3'
miRNA:   3'- -GCUCGAg-CuaGaCCGCggCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 80303 0.66 0.703321
Target:  5'- cCGAGC-CGuAUCcGGCgaacgcguugcGCUGCUGGCCGg -3'
miRNA:   3'- -GCUCGaGC-UAGaCCG-----------CGGCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 25658 0.66 0.703321
Target:  5'- cCGAGCgUUGGUgUaguaGGUGCCGCC-GUCGg -3'
miRNA:   3'- -GCUCG-AGCUAgA----CCGCGGCGGuCGGC- -5'
19756 5' -61.3 NC_004687.1 + 133138 0.66 0.703321
Target:  5'- uCGAGUUCGG--UGGCgacGUCGUCAGUCGc -3'
miRNA:   3'- -GCUCGAGCUagACCG---CGGCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 94961 0.66 0.703321
Target:  5'- cCGAGgUCGGccUCgaacGGCG-CGCUGGCCGu -3'
miRNA:   3'- -GCUCgAGCU--AGa---CCGCgGCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 106180 0.66 0.703321
Target:  5'- uGAGUUCGAUgaGGUgGCCGa-GGCCa -3'
miRNA:   3'- gCUCGAGCUAgaCCG-CGGCggUCGGc -5'
19756 5' -61.3 NC_004687.1 + 155667 0.66 0.693643
Target:  5'- aGGGCaUGGUCau-CGuCCGCCGGCCGg -3'
miRNA:   3'- gCUCGaGCUAGaccGC-GGCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 84503 0.66 0.693643
Target:  5'- aGAGCUCGuagaagGUCaGGCGCaggguGCCcgcGCCGa -3'
miRNA:   3'- gCUCGAGC------UAGaCCGCGg----CGGu--CGGC- -5'
19756 5' -61.3 NC_004687.1 + 149371 0.66 0.683918
Target:  5'- cCGAGCUgcugaUGAUgCUGG-GCauccauccgaGCCAGCCGg -3'
miRNA:   3'- -GCUCGA-----GCUA-GACCgCGg---------CGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 70794 0.66 0.674152
Target:  5'- --cGCUCGAUgUGGCGCagcuGCUgcaGGCCc -3'
miRNA:   3'- gcuCGAGCUAgACCGCGg---CGG---UCGGc -5'
19756 5' -61.3 NC_004687.1 + 138471 0.66 0.674152
Target:  5'- gCGuAGUg-GGUcCUGGCGCuCGCaCAGCCGc -3'
miRNA:   3'- -GC-UCGagCUA-GACCGCG-GCG-GUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 64551 0.66 0.674152
Target:  5'- aGGGCUCGA-CcGGCGCCaUCAuGCUGa -3'
miRNA:   3'- gCUCGAGCUaGaCCGCGGcGGU-CGGC- -5'
19756 5' -61.3 NC_004687.1 + 61135 0.66 0.664355
Target:  5'- -aAGUUgGAaC-GGUGCCGCCAGCUGc -3'
miRNA:   3'- gcUCGAgCUaGaCCGCGGCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 81831 0.66 0.664355
Target:  5'- uGGG-UCGGUCcggaGGCGCUGCCgAGUCGc -3'
miRNA:   3'- gCUCgAGCUAGa---CCGCGGCGG-UCGGC- -5'
19756 5' -61.3 NC_004687.1 + 151734 0.66 0.664355
Target:  5'- ---aCUCGGaggGGCGCCGCCGGgCCa -3'
miRNA:   3'- gcucGAGCUagaCCGCGGCGGUC-GGc -5'
19756 5' -61.3 NC_004687.1 + 145448 0.67 0.654534
Target:  5'- uGGGCUCc--CUGGuCGCUGCCGguguagucGCCGg -3'
miRNA:   3'- gCUCGAGcuaGACC-GCGGCGGU--------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.