miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19756 5' -61.3 NC_004687.1 + 127693 1.08 0.001215
Target:  5'- cCGAGCUCGAUCUGGCGCCGCCAGCCGu -3'
miRNA:   3'- -GCUCGAGCUAGACCGCGGCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 46093 0.76 0.201443
Target:  5'- -cAGCUCGGg-UGGCGgCGCCAGCCa -3'
miRNA:   3'- gcUCGAGCUagACCGCgGCGGUCGGc -5'
19756 5' -61.3 NC_004687.1 + 74273 0.76 0.206302
Target:  5'- --uGCUCGGUCUGGCGUCGgCAGgCCu -3'
miRNA:   3'- gcuCGAGCUAGACCGCGGCgGUC-GGc -5'
19756 5' -61.3 NC_004687.1 + 69597 0.75 0.221492
Target:  5'- cCGAG-UCGAUCgggcugcgGGCGCCGCCggaGGCCa -3'
miRNA:   3'- -GCUCgAGCUAGa-------CCGCGGCGG---UCGGc -5'
19756 5' -61.3 NC_004687.1 + 153555 0.75 0.243216
Target:  5'- --uGUUgGAUCUGGCGgCGCUGGCCGa -3'
miRNA:   3'- gcuCGAgCUAGACCGCgGCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 87982 0.75 0.243216
Target:  5'- aCGAGCUUgugGAUCUGGCGCC-CgAGCuCGg -3'
miRNA:   3'- -GCUCGAG---CUAGACCGCGGcGgUCG-GC- -5'
19756 5' -61.3 NC_004687.1 + 142782 0.73 0.298552
Target:  5'- cCGAacuGCUCGAUCUGGUagcgaccguuGCCGCCcuCCGa -3'
miRNA:   3'- -GCU---CGAGCUAGACCG----------CGGCGGucGGC- -5'
19756 5' -61.3 NC_004687.1 + 46007 0.73 0.326113
Target:  5'- uCGGGCagucgcaggCGGUCuUGGCGCCGCCGcGCgCGa -3'
miRNA:   3'- -GCUCGa--------GCUAG-ACCGCGGCGGU-CG-GC- -5'
19756 5' -61.3 NC_004687.1 + 75672 0.72 0.331126
Target:  5'- uCGGGCUCGAuguucugggugggaUCguugaacggcaGGCGCCcgGCCAGCCGc -3'
miRNA:   3'- -GCUCGAGCU--------------AGa----------CCGCGG--CGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 110675 0.72 0.355518
Target:  5'- cCGAGCUgccCGAc--GGCGCCGCCuggcGCCGa -3'
miRNA:   3'- -GCUCGA---GCUagaCCGCGGCGGu---CGGC- -5'
19756 5' -61.3 NC_004687.1 + 9311 0.71 0.403015
Target:  5'- -cGGCUCGuggcugcgCUGGCGCCGCgAGUgGa -3'
miRNA:   3'- gcUCGAGCua------GACCGCGGCGgUCGgC- -5'
19756 5' -61.3 NC_004687.1 + 50587 0.71 0.403015
Target:  5'- uCGcGCUCGAUCagggugcuggUGGUGCUGUCAGUCa -3'
miRNA:   3'- -GCuCGAGCUAG----------ACCGCGGCGGUCGGc -5'
19756 5' -61.3 NC_004687.1 + 28219 0.71 0.411313
Target:  5'- gCGAGCagGAcggCUGGCGgCGCCAGaUCGa -3'
miRNA:   3'- -GCUCGagCUa--GACCGCgGCGGUC-GGC- -5'
19756 5' -61.3 NC_004687.1 + 131488 0.7 0.436831
Target:  5'- aGGGCUUGAccUCgaaGGCGCCG-UGGCCGa -3'
miRNA:   3'- gCUCGAGCU--AGa--CCGCGGCgGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 70492 0.7 0.445537
Target:  5'- uGGGCauggacggaUCGGUCacgccGGUGCCGUCGGCCa -3'
miRNA:   3'- gCUCG---------AGCUAGa----CCGCGGCGGUCGGc -5'
19756 5' -61.3 NC_004687.1 + 75625 0.7 0.45434
Target:  5'- uGAGCUCcaGAg--GGCccGCCGCCgAGCCGa -3'
miRNA:   3'- gCUCGAG--CUagaCCG--CGGCGG-UCGGC- -5'
19756 5' -61.3 NC_004687.1 + 69000 0.7 0.45434
Target:  5'- uGAGCcUGAccaUCgUGGCGCUGaCCAGCCu -3'
miRNA:   3'- gCUCGaGCU---AG-ACCGCGGC-GGUCGGc -5'
19756 5' -61.3 NC_004687.1 + 28771 0.7 0.45434
Target:  5'- aGAaCUCGucgagCU-GCGCCGCCAGCUGg -3'
miRNA:   3'- gCUcGAGCua---GAcCGCGGCGGUCGGC- -5'
19756 5' -61.3 NC_004687.1 + 62254 0.7 0.463235
Target:  5'- uGGGCacCGAUCUGGCgGUCGCCuucCCGg -3'
miRNA:   3'- gCUCGa-GCUAGACCG-CGGCGGuc-GGC- -5'
19756 5' -61.3 NC_004687.1 + 31570 0.7 0.472221
Target:  5'- -cAGCUUGAUCUGG-GCCuGCaGGCCGu -3'
miRNA:   3'- gcUCGAGCUAGACCgCGG-CGgUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.