miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19757 3' -54.7 NC_004687.1 + 102002 0.66 0.953446
Target:  5'- aGGca-GGGuCAUGGGgaaGuCCUCCUCa -3'
miRNA:   3'- gCCuugCCUuGUACCCa--CuGGAGGAG- -5'
19757 3' -54.7 NC_004687.1 + 67845 0.66 0.953446
Target:  5'- aGGugaucagcuGCGGcAgGU-GGUGGCCUCCUCc -3'
miRNA:   3'- gCCu--------UGCCuUgUAcCCACUGGAGGAG- -5'
19757 3' -54.7 NC_004687.1 + 154719 0.66 0.948924
Target:  5'- uGGAcCGGGACAagUGGcggggccGUGACUUCCa- -3'
miRNA:   3'- gCCUuGCCUUGU--ACC-------CACUGGAGGag -5'
19757 3' -54.7 NC_004687.1 + 32637 0.66 0.940447
Target:  5'- gGGAGCGGGGCAcUGGa-GACUUCUacUCg -3'
miRNA:   3'- gCCUUGCCUUGU-ACCcaCUGGAGG--AG- -5'
19757 3' -54.7 NC_004687.1 + 124966 0.66 0.940447
Target:  5'- uGGGAUGacgaacauGAACAUGGGUGAUgUUCa- -3'
miRNA:   3'- gCCUUGC--------CUUGUACCCACUGgAGGag -5'
19757 3' -54.7 NC_004687.1 + 4846 0.67 0.930595
Target:  5'- aGGGGCaGGggUAUcgcaGGGccugGACCUCCaUCa -3'
miRNA:   3'- gCCUUG-CCuuGUA----CCCa---CUGGAGG-AG- -5'
19757 3' -54.7 NC_004687.1 + 124563 0.67 0.919783
Target:  5'- aGGAugguGCGGcACcgGGGUGcCCUCgUUg -3'
miRNA:   3'- gCCU----UGCCuUGuaCCCACuGGAGgAG- -5'
19757 3' -54.7 NC_004687.1 + 63582 0.67 0.919783
Target:  5'- uCGGGAUuacuacaaGGAGCAgaUGGaGUcGACCUCCaUCg -3'
miRNA:   3'- -GCCUUG--------CCUUGU--ACC-CA-CUGGAGG-AG- -5'
19757 3' -54.7 NC_004687.1 + 106901 0.67 0.914017
Target:  5'- uGGGGCGG--CAUGGGUGGCg-CCg- -3'
miRNA:   3'- gCCUUGCCuuGUACCCACUGgaGGag -5'
19757 3' -54.7 NC_004687.1 + 44861 0.67 0.908012
Target:  5'- cCGGGcCGGAugcCccGGGUGugCUCgUCg -3'
miRNA:   3'- -GCCUuGCCUu--GuaCCCACugGAGgAG- -5'
19757 3' -54.7 NC_004687.1 + 151451 0.67 0.908012
Target:  5'- gGGAGC-GAACA-GGGcauUGGCCUCgCUCc -3'
miRNA:   3'- gCCUUGcCUUGUaCCC---ACUGGAG-GAG- -5'
19757 3' -54.7 NC_004687.1 + 22758 0.68 0.904296
Target:  5'- gCGGAagcccaugcuggccaGCGcGGAgGUGGa-GACCUCCUCg -3'
miRNA:   3'- -GCCU---------------UGC-CUUgUACCcaCUGGAGGAG- -5'
19757 3' -54.7 NC_004687.1 + 69802 0.68 0.901771
Target:  5'- cCGG-GCGGAcCGUGgacGGUGACCUUCa- -3'
miRNA:   3'- -GCCuUGCCUuGUAC---CCACUGGAGGag -5'
19757 3' -54.7 NC_004687.1 + 137272 0.69 0.859535
Target:  5'- uGGAuCGGGcCAUGGGUuucuCCUUCUCu -3'
miRNA:   3'- gCCUuGCCUuGUACCCAcu--GGAGGAG- -5'
19757 3' -54.7 NC_004687.1 + 38423 0.69 0.827187
Target:  5'- uGGAcuccauaaGCGGAugGUcguaGGUGACCUgCUCg -3'
miRNA:   3'- gCCU--------UGCCUugUAc---CCACUGGAgGAG- -5'
19757 3' -54.7 NC_004687.1 + 36429 0.69 0.827187
Target:  5'- aGGu-CGGAguACAUGuuGGUGGCCUgCUCg -3'
miRNA:   3'- gCCuuGCCU--UGUAC--CCACUGGAgGAG- -5'
19757 3' -54.7 NC_004687.1 + 79824 0.71 0.764043
Target:  5'- uGGAugGcGAACucacGGcGACCUCCUCg -3'
miRNA:   3'- gCCUugC-CUUGuac-CCaCUGGAGGAG- -5'
19757 3' -54.7 NC_004687.1 + 102089 0.71 0.74286
Target:  5'- cCGGAcuuggucacgauCGGGAUGUuGGUGACCUUCUCg -3'
miRNA:   3'- -GCCUu-----------GCCUUGUAcCCACUGGAGGAG- -5'
19757 3' -54.7 NC_004687.1 + 94684 0.73 0.623628
Target:  5'- gGcGGugGGGACcUGGGUGACCgagagUCUCg -3'
miRNA:   3'- gC-CUugCCUUGuACCCACUGGa----GGAG- -5'
19757 3' -54.7 NC_004687.1 + 136623 0.74 0.59291
Target:  5'- aGGGugacccaguGCGGGGCGUGGGUGGCgccgagguuCUCCUg -3'
miRNA:   3'- gCCU---------UGCCUUGUACCCACUG---------GAGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.