miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19757 5' -48.7 NC_004687.1 + 56096 0.66 0.99895
Target:  5'- cAGGAGGAcgaccuGcgGACCUUGaagCCCAa-- -3'
miRNA:   3'- -UCCUCCUu-----UuaCUGGGAUa--GGGUaac -5'
19757 5' -48.7 NC_004687.1 + 59575 0.66 0.998126
Target:  5'- cAGGAGGAAucAUGAaCCCcaaggCCCAg-- -3'
miRNA:   3'- -UCCUCCUUu-UACU-GGGaua--GGGUaac -5'
19757 5' -48.7 NC_004687.1 + 103099 0.67 0.996814
Target:  5'- gGGGAGGucggcGAUGAaCUUGUCCCGg-- -3'
miRNA:   3'- -UCCUCCuu---UUACUgGGAUAGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 73441 0.67 0.996814
Target:  5'- aGGGAuGGAuguAAUGACCa-GUCCCGg-- -3'
miRNA:   3'- -UCCU-CCUu--UUACUGGgaUAGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 77155 0.67 0.996814
Target:  5'- gGGGAGGuaccuucuGAUGACCau-UCCCGg-- -3'
miRNA:   3'- -UCCUCCuu------UUACUGGgauAGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 106723 0.67 0.995575
Target:  5'- -cGAGGAcGAAUGACCUUGaCCCGa-- -3'
miRNA:   3'- ucCUCCU-UUUACUGGGAUaGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 53919 0.68 0.994821
Target:  5'- gAGGAGGAcuuccccAUGACCCUG-CCUg--- -3'
miRNA:   3'- -UCCUCCUuu-----UACUGGGAUaGGGuaac -5'
19757 5' -48.7 NC_004687.1 + 91415 0.68 0.993967
Target:  5'- ---cGGGGAAUGACCC-GUCCUAUa- -3'
miRNA:   3'- uccuCCUUUUACUGGGaUAGGGUAac -5'
19757 5' -48.7 NC_004687.1 + 154073 0.68 0.993004
Target:  5'- -cGGGGAcc-UGGCCCUGUUCCAg-- -3'
miRNA:   3'- ucCUCCUuuuACUGGGAUAGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 36466 0.68 0.990709
Target:  5'- cGGGcuGGGcguAGAUGACCCggucGUCCCAg-- -3'
miRNA:   3'- -UCC--UCCu--UUUACUGGGa---UAGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 15199 0.69 0.984187
Target:  5'- cGGAucacaugccucGGGGAAUGAUCUcggggcaUAUCCCGUUGa -3'
miRNA:   3'- uCCU-----------CCUUUUACUGGG-------AUAGGGUAAC- -5'
19757 5' -48.7 NC_004687.1 + 5720 0.7 0.980187
Target:  5'- -cGAGGAAGuucagcGUGACCCgcUCCCAc-- -3'
miRNA:   3'- ucCUCCUUU------UACUGGGauAGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 135665 0.7 0.977801
Target:  5'- uGGAGGAAGuUGGCUCgugcgCCCAUg- -3'
miRNA:   3'- uCCUCCUUUuACUGGGaua--GGGUAac -5'
19757 5' -48.7 NC_004687.1 + 14689 0.72 0.945694
Target:  5'- cAGGucGGGAAUGAUCUgcgggcaUAUCCCGUUGa -3'
miRNA:   3'- -UCCucCUUUUACUGGG-------AUAGGGUAAC- -5'
19757 5' -48.7 NC_004687.1 + 59232 0.72 0.941397
Target:  5'- uGGGAGGAccacGGGUGAacaCCUAUCUCGUc- -3'
miRNA:   3'- -UCCUCCU----UUUACUg--GGAUAGGGUAac -5'
19757 5' -48.7 NC_004687.1 + 48622 0.75 0.855592
Target:  5'- cAGGAGGucAAUGGCCCgcugguaGUCCCGg-- -3'
miRNA:   3'- -UCCUCCuuUUACUGGGa------UAGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 25333 0.75 0.820973
Target:  5'- cGGAGGAcuAUGACCUggacgAUCCCGa-- -3'
miRNA:   3'- uCCUCCUuuUACUGGGa----UAGGGUaac -5'
19757 5' -48.7 NC_004687.1 + 127436 1.09 0.014519
Target:  5'- gAGGAGGAAAAUGACCCUAUCCCAUUGc -3'
miRNA:   3'- -UCCUCCUUUUACUGGGAUAGGGUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.