miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19758 3' -61.3 NC_004687.1 + 153508 0.66 0.713279
Target:  5'- cGGCAUCGAgUgGCUGGCGGaucuucagcacgucaUCGGGCg -3'
miRNA:   3'- cUCGUGGCU-GgUGGCCGCC---------------AGCUCGa -5'
19758 3' -61.3 NC_004687.1 + 148747 0.66 0.709432
Target:  5'- cGGCACuCGAUCuuCCaGGCcaaccaGGUCGAGCa -3'
miRNA:   3'- cUCGUG-GCUGGu-GG-CCG------CCAGCUCGa -5'
19758 3' -61.3 NC_004687.1 + 18052 0.66 0.709432
Target:  5'- cGGCACCGucgaCACCGaGCGcacCGAGCa -3'
miRNA:   3'- cUCGUGGCug--GUGGC-CGCca-GCUCGa -5'
19758 3' -61.3 NC_004687.1 + 9327 0.66 0.709432
Target:  5'- uGGCGCCGcgaguggaCACCGGCGGgcuaCGuGCc -3'
miRNA:   3'- cUCGUGGCug------GUGGCCGCCa---GCuCGa -5'
19758 3' -61.3 NC_004687.1 + 47698 0.66 0.709432
Target:  5'- aGGGCGCCgGAUCGUCGGUGGgCG-GCUa -3'
miRNA:   3'- -CUCGUGG-CUGGUGGCCGCCaGCuCGA- -5'
19758 3' -61.3 NC_004687.1 + 48168 0.66 0.709432
Target:  5'- cGGCccguCCGAUgACCGGCa-UCGAGCa -3'
miRNA:   3'- cUCGu---GGCUGgUGGCCGccAGCUCGa -5'
19758 3' -61.3 NC_004687.1 + 135543 0.66 0.709432
Target:  5'- aGGUGCCG-CCGUgGGCGG-CGGGCUu -3'
miRNA:   3'- cUCGUGGCuGGUGgCCGCCaGCUCGA- -5'
19758 3' -61.3 NC_004687.1 + 92666 0.66 0.706541
Target:  5'- --aCACCGacGCCACCGcgcugguacucgacGCGGUCGcGCUg -3'
miRNA:   3'- cucGUGGC--UGGUGGC--------------CGCCAGCuCGA- -5'
19758 3' -61.3 NC_004687.1 + 75486 0.66 0.699775
Target:  5'- gGGGCGCCugGGcCCGCCGGgGGgacuaCGGGUa -3'
miRNA:   3'- -CUCGUGG--CU-GGUGGCCgCCa----GCUCGa -5'
19758 3' -61.3 NC_004687.1 + 139292 0.66 0.699775
Target:  5'- cAGCGgUGACCugaccgcgcucaGCCuGGCGGUCGAcgGCa -3'
miRNA:   3'- cUCGUgGCUGG------------UGG-CCGCCAGCU--CGa -5'
19758 3' -61.3 NC_004687.1 + 21850 0.66 0.699775
Target:  5'- -cGCACCGcUgGCUGcGCGGUCG-GCg -3'
miRNA:   3'- cuCGUGGCuGgUGGC-CGCCAGCuCGa -5'
19758 3' -61.3 NC_004687.1 + 97107 0.66 0.699775
Target:  5'- cGGCACCGcCCAggugugggUCGGCGGgucguacggCGGGCc -3'
miRNA:   3'- cUCGUGGCuGGU--------GGCCGCCa--------GCUCGa -5'
19758 3' -61.3 NC_004687.1 + 53172 0.66 0.699775
Target:  5'- aAG-ACC-ACCGCCGGUGGagCGAGCc -3'
miRNA:   3'- cUCgUGGcUGGUGGCCGCCa-GCUCGa -5'
19758 3' -61.3 NC_004687.1 + 53706 0.66 0.699775
Target:  5'- uGAGCGCC-ACCGuggUCGGCGGcUCGccGCUg -3'
miRNA:   3'- -CUCGUGGcUGGU---GGCCGCC-AGCu-CGA- -5'
19758 3' -61.3 NC_004687.1 + 9522 0.66 0.698807
Target:  5'- cGGCAgCGGCCAgCGGCGccccggcGUCGGGa- -3'
miRNA:   3'- cUCGUgGCUGGUgGCCGC-------CAGCUCga -5'
19758 3' -61.3 NC_004687.1 + 81844 0.66 0.690066
Target:  5'- aGGCgcuGCCGAgUCGCgGGCGGUCuGGGUg -3'
miRNA:   3'- cUCG---UGGCU-GGUGgCCGCCAG-CUCGa -5'
19758 3' -61.3 NC_004687.1 + 87578 0.66 0.690066
Target:  5'- cGAGCugauGCCGACCgcGCCGGU-GUCgGAGUa -3'
miRNA:   3'- -CUCG----UGGCUGG--UGGCCGcCAG-CUCGa -5'
19758 3' -61.3 NC_004687.1 + 48637 0.66 0.690066
Target:  5'- cAGCGCCGACCAgaaGGUGuUCGAGg- -3'
miRNA:   3'- cUCGUGGCUGGUgg-CCGCcAGCUCga -5'
19758 3' -61.3 NC_004687.1 + 47585 0.66 0.690066
Target:  5'- cAGCGCUGguGCUucgacgguauCCGGCGG-CGAGCUc -3'
miRNA:   3'- cUCGUGGC--UGGu---------GGCCGCCaGCUCGA- -5'
19758 3' -61.3 NC_004687.1 + 21799 0.66 0.690066
Target:  5'- aGGCGCCgGAUCGCUGGCGucGUCGAc-- -3'
miRNA:   3'- cUCGUGG-CUGGUGGCCGC--CAGCUcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.