miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19758 5' -56.2 NC_004687.1 + 93073 0.66 0.912015
Target:  5'- --cGUCCgACAucUGGGUGGgcCGGUACGUg -3'
miRNA:   3'- cauCGGG-UGU--GCCCACCa-GUCAUGCA- -5'
19758 5' -56.2 NC_004687.1 + 21327 0.66 0.912015
Target:  5'- -aGGCCa--ACGGGUGGUCucaggGCGa -3'
miRNA:   3'- caUCGGgugUGCCCACCAGuca--UGCa -5'
19758 5' -56.2 NC_004687.1 + 78048 0.66 0.879363
Target:  5'- cGUGGCCCagggACugGGcGUGGcgucUCAGgGCGg -3'
miRNA:   3'- -CAUCGGG----UGugCC-CACC----AGUCaUGCa -5'
19758 5' -56.2 NC_004687.1 + 108472 0.66 0.879363
Target:  5'- -cAGUCCugGcCGGGUGGgCAGU-CGg -3'
miRNA:   3'- caUCGGGugU-GCCCACCaGUCAuGCa -5'
19758 5' -56.2 NC_004687.1 + 126086 0.67 0.869951
Target:  5'- cGUGGuCCCGCugaccCGGGUGGUCGacaccaucgccaccGUGCu- -3'
miRNA:   3'- -CAUC-GGGUGu----GCCCACCAGU--------------CAUGca -5'
19758 5' -56.2 NC_004687.1 + 36446 0.67 0.857102
Target:  5'- gGUGGCCUGCuCGacGUGGUCGGgcuggGCGUa -3'
miRNA:   3'- -CAUCGGGUGuGCc-CACCAGUCa----UGCA- -5'
19758 5' -56.2 NC_004687.1 + 13529 0.67 0.852425
Target:  5'- cGgcGUCCACACGGaucguguuguaccgaGUGGUCAcGUACu- -3'
miRNA:   3'- -CauCGGGUGUGCC---------------CACCAGU-CAUGca -5'
19758 5' -56.2 NC_004687.1 + 16857 0.67 0.849267
Target:  5'- uUGGCCCGCcagcuccgcCGGGUGG-C-GUACGUc -3'
miRNA:   3'- cAUCGGGUGu--------GCCCACCaGuCAUGCA- -5'
19758 5' -56.2 NC_004687.1 + 153865 0.67 0.849267
Target:  5'- -cGGCCUuccuGCACGGGgcgGugaccuuccucaGUCGGUACGUg -3'
miRNA:   3'- caUCGGG----UGUGCCCa--C------------CAGUCAUGCA- -5'
19758 5' -56.2 NC_004687.1 + 96284 0.67 0.841234
Target:  5'- -gAGCCUccuugGCGCGGGUGGcCuuGUugGg -3'
miRNA:   3'- caUCGGG-----UGUGCCCACCaGu-CAugCa -5'
19758 5' -56.2 NC_004687.1 + 30173 0.68 0.816028
Target:  5'- -gAGCUCGacCGCcGGUGGUCGGUGCu- -3'
miRNA:   3'- caUCGGGU--GUGcCCACCAGUCAUGca -5'
19758 5' -56.2 NC_004687.1 + 120101 0.68 0.807281
Target:  5'- -cGGCUCGCugGGGUGGcaucCAGccacgGCGUc -3'
miRNA:   3'- caUCGGGUGugCCCACCa---GUCa----UGCA- -5'
19758 5' -56.2 NC_004687.1 + 150327 0.68 0.78932
Target:  5'- -gGGCCCACACGuGGUcgacGGUCGccgACGa -3'
miRNA:   3'- caUCGGGUGUGC-CCA----CCAGUca-UGCa -5'
19758 5' -56.2 NC_004687.1 + 90417 0.69 0.780123
Target:  5'- cGUGGCCguCGCGGGUguaggcGGUCAGcACu- -3'
miRNA:   3'- -CAUCGGguGUGCCCA------CCAGUCaUGca -5'
19758 5' -56.2 NC_004687.1 + 107705 0.69 0.751772
Target:  5'- cGUGGCCCGCugGcc-GGUCgAGUACGc -3'
miRNA:   3'- -CAUCGGGUGugCccaCCAG-UCAUGCa -5'
19758 5' -56.2 NC_004687.1 + 107235 0.69 0.742099
Target:  5'- --uGUCCACACGGGUGGgcgccUCGGUcucgcCGUa -3'
miRNA:   3'- cauCGGGUGUGCCCACC-----AGUCAu----GCA- -5'
19758 5' -56.2 NC_004687.1 + 140827 0.69 0.742099
Target:  5'- -gAGUCCGCACcGGccucgGGUCAGUACa- -3'
miRNA:   3'- caUCGGGUGUGcCCa----CCAGUCAUGca -5'
19758 5' -56.2 NC_004687.1 + 135892 0.71 0.651815
Target:  5'- -gGGCCCGgGCGuGGUGGUCGucUGCGa -3'
miRNA:   3'- caUCGGGUgUGC-CCACCAGUc-AUGCa -5'
19758 5' -56.2 NC_004687.1 + 37332 0.72 0.580352
Target:  5'- -aGGCCCGCACGGcG-GGUCAGaucuucgACGg -3'
miRNA:   3'- caUCGGGUGUGCC-CaCCAGUCa------UGCa -5'
19758 5' -56.2 NC_004687.1 + 14703 0.74 0.481836
Target:  5'- -gGGUCCGCGCguccaccgcuGGGUGGUCGGaGCGUc -3'
miRNA:   3'- caUCGGGUGUG----------CCCACCAGUCaUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.