miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19759 3' -61.7 NC_004687.1 + 114892 0.66 0.654934
Target:  5'- uUCCUCuACUGCCCgaccacgcugugggaGuGGGCaguCAGCAACg -3'
miRNA:   3'- cAGGGGuUGACGGG---------------C-CCCG---GUCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 92105 0.66 0.654934
Target:  5'- cGUCCgCGccgaucaggagcgucGCcGCuCCGGGGCC-GCGACc -3'
miRNA:   3'- -CAGGgGU---------------UGaCG-GGCCCCGGuCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 56590 0.66 0.650952
Target:  5'- --gCCCGACgucGaacaCCGGGGCUacuGGCGGCa -3'
miRNA:   3'- cagGGGUUGa--Cg---GGCCCCGG---UCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 128272 0.66 0.650952
Target:  5'- -gCCCgaAACUGCUCGucgcGGCCAGCAu- -3'
miRNA:   3'- caGGGg-UUGACGGGCc---CCGGUCGUug -5'
19759 3' -61.7 NC_004687.1 + 129611 0.66 0.650952
Target:  5'- -aCCCCg---GCCCcGGGCgAGUAACg -3'
miRNA:   3'- caGGGGuugaCGGGcCCCGgUCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 22307 0.66 0.640987
Target:  5'- -aCCCCAGCcacgUGUggCGGGGCCGGUGGg -3'
miRNA:   3'- caGGGGUUG----ACGg-GCCCCGGUCGUUg -5'
19759 3' -61.7 NC_004687.1 + 132588 0.66 0.640987
Target:  5'- gGUgCCCAGCUugGCCCGcaGGGCCucccuGCGc- -3'
miRNA:   3'- -CAgGGGUUGA--CGGGC--CCCGGu----CGUug -5'
19759 3' -61.7 NC_004687.1 + 58029 0.66 0.640987
Target:  5'- aGUCCCCGGC-----GGGGCCAGUGAUc -3'
miRNA:   3'- -CAGGGGUUGacgggCCCCGGUCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 57171 0.66 0.640987
Target:  5'- -aCCUCAAC-GCCCGGcGGacaCCGGaCAGCg -3'
miRNA:   3'- caGGGGUUGaCGGGCC-CC---GGUC-GUUG- -5'
19759 3' -61.7 NC_004687.1 + 108710 0.66 0.635005
Target:  5'- aGUCCUUGGCcugGCuugaacucggaggauCCGGGGCCAGCc-- -3'
miRNA:   3'- -CAGGGGUUGa--CG---------------GGCCCCGGUCGuug -5'
19759 3' -61.7 NC_004687.1 + 89886 0.66 0.631016
Target:  5'- aUCaCCAGCUcGCCCuGuGGGUCGGCAGa -3'
miRNA:   3'- cAGgGGUUGA-CGGG-C-CCCGGUCGUUg -5'
19759 3' -61.7 NC_004687.1 + 83535 0.66 0.631016
Target:  5'- -gCCCgCAGCUGaCCCGGGuguccgacgGCCagauggucgucGGCGACa -3'
miRNA:   3'- caGGG-GUUGAC-GGGCCC---------CGG-----------UCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 80176 0.66 0.631016
Target:  5'- -gCCCC-GCUcGCCCuuGGCCAGCGGg -3'
miRNA:   3'- caGGGGuUGA-CGGGccCCGGUCGUUg -5'
19759 3' -61.7 NC_004687.1 + 126806 0.66 0.631016
Target:  5'- -gCCUgGACUGCCCGGGccgauGCCucacGUGACc -3'
miRNA:   3'- caGGGgUUGACGGGCCC-----CGGu---CGUUG- -5'
19759 3' -61.7 NC_004687.1 + 54974 0.66 0.629022
Target:  5'- --gCCCAGCUGCaguggUGGGGCCugauucagggccGCGACa -3'
miRNA:   3'- cagGGGUUGACGg----GCCCCGGu-----------CGUUG- -5'
19759 3' -61.7 NC_004687.1 + 14958 0.66 0.628024
Target:  5'- -aCCCCGGCgacaUGCCacgguuggccagguCGGGGUCuucGGCGACg -3'
miRNA:   3'- caGGGGUUG----ACGG--------------GCCCCGG---UCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 50726 0.66 0.625033
Target:  5'- gGUCUCCAGCgcggGCaCCGgccuguucaccguguGGGUgGGCGACa -3'
miRNA:   3'- -CAGGGGUUGa---CG-GGC---------------CCCGgUCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 27151 0.66 0.621046
Target:  5'- cGUCgCCGACggGCCgGugcgcgugguguGGGCCGGUGACu -3'
miRNA:   3'- -CAGgGGUUGa-CGGgC------------CCCGGUCGUUG- -5'
19759 3' -61.7 NC_004687.1 + 132954 0.66 0.621046
Target:  5'- cGUCCCCAGaccagacacucCUGCUCGGuGCCgaAGCGGu -3'
miRNA:   3'- -CAGGGGUU-----------GACGGGCCcCGG--UCGUUg -5'
19759 3' -61.7 NC_004687.1 + 69712 0.66 0.621046
Target:  5'- aUCCCguuCAACgcgaCCCaGGGCCAGguGCa -3'
miRNA:   3'- cAGGG---GUUGac--GGGcCCCGGUCguUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.