miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19759 5' -57 NC_004687.1 + 51678 0.66 0.891015
Target:  5'- aGCGUCaGCUGGacagCUCgcGCCugCUGGCgAa -3'
miRNA:   3'- -CGUAG-CGACCa---GAG--UGGugGGCUGgU- -5'
19759 5' -57 NC_004687.1 + 117006 0.66 0.891015
Target:  5'- gGCGU-GCUGGUCaaCACCgACCCGGucuucCCGg -3'
miRNA:   3'- -CGUAgCGACCAGa-GUGG-UGGGCU-----GGU- -5'
19759 5' -57 NC_004687.1 + 3765 0.66 0.891015
Target:  5'- gGCuggcCGCUGGUCaUCaugGCCGCgCUGGCCc -3'
miRNA:   3'- -CGua--GCGACCAG-AG---UGGUG-GGCUGGu -5'
19759 5' -57 NC_004687.1 + 137973 0.66 0.891015
Target:  5'- -gGUCGCacaGaUCUaCACCACCaCGGCCAa -3'
miRNA:   3'- cgUAGCGa--CcAGA-GUGGUGG-GCUGGU- -5'
19759 5' -57 NC_004687.1 + 141311 0.66 0.891015
Target:  5'- ---aCGCaUGGUCUUGCCGCCguCGAgCCGg -3'
miRNA:   3'- cguaGCG-ACCAGAGUGGUGG--GCU-GGU- -5'
19759 5' -57 NC_004687.1 + 23943 0.66 0.891015
Target:  5'- cGCA-CGCaGG-CU-GCCACCgGACCAg -3'
miRNA:   3'- -CGUaGCGaCCaGAgUGGUGGgCUGGU- -5'
19759 5' -57 NC_004687.1 + 42195 0.66 0.89035
Target:  5'- uGCAUCGUcuaccUGGUCggCAacucgccCCACCUGACa- -3'
miRNA:   3'- -CGUAGCG-----ACCAGa-GU-------GGUGGGCUGgu -5'
19759 5' -57 NC_004687.1 + 17676 0.66 0.88426
Target:  5'- aGCAUCGC-GGcCUCGg-ACUCGACCGg -3'
miRNA:   3'- -CGUAGCGaCCaGAGUggUGGGCUGGU- -5'
19759 5' -57 NC_004687.1 + 8718 0.66 0.88426
Target:  5'- cGCGaCGacCUGGaUUUcCGCCACCUGGCCGg -3'
miRNA:   3'- -CGUaGC--GACC-AGA-GUGGUGGGCUGGU- -5'
19759 5' -57 NC_004687.1 + 150583 0.66 0.88426
Target:  5'- aGCAggcCGUUGGUCUUcuUgGCCuCGGCCAg -3'
miRNA:   3'- -CGUa--GCGACCAGAGu-GgUGG-GCUGGU- -5'
19759 5' -57 NC_004687.1 + 14189 0.66 0.88426
Target:  5'- gGCGUC-CUGGUa-CGCCgACCCG-CCGg -3'
miRNA:   3'- -CGUAGcGACCAgaGUGG-UGGGCuGGU- -5'
19759 5' -57 NC_004687.1 + 88412 0.66 0.88219
Target:  5'- -gAUCGCcGGUCggCACCcgguagguggggucGCCCGGCUu -3'
miRNA:   3'- cgUAGCGaCCAGa-GUGG--------------UGGGCUGGu -5'
19759 5' -57 NC_004687.1 + 36924 0.66 0.877286
Target:  5'- gGUGUCGUUGG-C-CACCugCCGcuugaGCCAc -3'
miRNA:   3'- -CGUAGCGACCaGaGUGGugGGC-----UGGU- -5'
19759 5' -57 NC_004687.1 + 86193 0.66 0.877286
Target:  5'- cGCAgCGCg---CUCugCACCUGGCCc -3'
miRNA:   3'- -CGUaGCGaccaGAGugGUGGGCUGGu -5'
19759 5' -57 NC_004687.1 + 144522 0.66 0.877286
Target:  5'- gGCGUgG-UGG-CUCACCACaCCGGCa- -3'
miRNA:   3'- -CGUAgCgACCaGAGUGGUG-GGCUGgu -5'
19759 5' -57 NC_004687.1 + 36942 0.66 0.877286
Target:  5'- gGCuUCGCcGGUg--GCCGCUCGGCCAa -3'
miRNA:   3'- -CGuAGCGaCCAgagUGGUGGGCUGGU- -5'
19759 5' -57 NC_004687.1 + 145193 0.66 0.870099
Target:  5'- cGCAUCGCgcgGGUggccgCUgGCCaggGCgCCGACCc -3'
miRNA:   3'- -CGUAGCGa--CCA-----GAgUGG---UG-GGCUGGu -5'
19759 5' -57 NC_004687.1 + 32147 0.66 0.870099
Target:  5'- ---cCGgUGGUCgccgUCGgCACCCGACCc -3'
miRNA:   3'- cguaGCgACCAG----AGUgGUGGGCUGGu -5'
19759 5' -57 NC_004687.1 + 146525 0.66 0.870099
Target:  5'- gGCGcUgGgUGGUCUCGCUgcgguaguaGCCCGACgAg -3'
miRNA:   3'- -CGU-AgCgACCAGAGUGG---------UGGGCUGgU- -5'
19759 5' -57 NC_004687.1 + 55186 0.66 0.870099
Target:  5'- cGCAUC---GGUC-CACCAgUCGACCAc -3'
miRNA:   3'- -CGUAGcgaCCAGaGUGGUgGGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.