miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19760 3' -55.9 NC_004687.1 + 123543 0.66 0.892907
Target:  5'- gGUCGCCAGGaAUGGUCucGCUgugCGGAu -3'
miRNA:   3'- -UAGUGGUCC-UACCAGc-CGAag-GUCUu -5'
19760 3' -55.9 NC_004687.1 + 53709 0.66 0.888784
Target:  5'- -gCGCCAccGUGGUCGGCggcucgccgcugcgcUUCCGGGAc -3'
miRNA:   3'- uaGUGGUccUACCAGCCG---------------AAGGUCUU- -5'
19760 3' -55.9 NC_004687.1 + 71708 0.66 0.885988
Target:  5'- gGUgGCCAGGGUgaGGUCGGagaucucgaUCCAGGc -3'
miRNA:   3'- -UAgUGGUCCUA--CCAGCCga-------AGGUCUu -5'
19760 3' -55.9 NC_004687.1 + 134306 0.66 0.878835
Target:  5'- --gACCAGGAUGGcgugCGGCgUCgAGGc -3'
miRNA:   3'- uagUGGUCCUACCa---GCCGaAGgUCUu -5'
19760 3' -55.9 NC_004687.1 + 150360 0.66 0.871452
Target:  5'- -gCGCCAGGAc-GUCaGCUUCCAGc- -3'
miRNA:   3'- uaGUGGUCCUacCAGcCGAAGGUCuu -5'
19760 3' -55.9 NC_004687.1 + 131805 0.66 0.863845
Target:  5'- cGUCACCGGG--GGUCuGGCc-CCAGAu -3'
miRNA:   3'- -UAGUGGUCCuaCCAG-CCGaaGGUCUu -5'
19760 3' -55.9 NC_004687.1 + 35634 0.66 0.863845
Target:  5'- cGUCGCCGGGGUcGUgGGCcuuggagCCGGAGc -3'
miRNA:   3'- -UAGUGGUCCUAcCAgCCGaa-----GGUCUU- -5'
19760 3' -55.9 NC_004687.1 + 146963 0.66 0.863845
Target:  5'- gGUCAUCGGGGagUGGgccgaCGGCUUCaAGAAc -3'
miRNA:   3'- -UAGUGGUCCU--ACCa----GCCGAAGgUCUU- -5'
19760 3' -55.9 NC_004687.1 + 147404 0.67 0.847983
Target:  5'- cGUCgAUguGGAUGGUCGGCa-CCAGc- -3'
miRNA:   3'- -UAG-UGguCCUACCAGCCGaaGGUCuu -5'
19760 3' -55.9 NC_004687.1 + 120517 0.67 0.831305
Target:  5'- -cUACCAGGAcuaccuggcccUGGUCgaGGCcUUCCGGAc -3'
miRNA:   3'- uaGUGGUCCU-----------ACCAG--CCG-AAGGUCUu -5'
19760 3' -55.9 NC_004687.1 + 95053 0.67 0.828736
Target:  5'- gGUCAUCAGGGcgaagUGGUCGGCcagggUgcccugcgccacgaUCCAGAAc -3'
miRNA:   3'- -UAGUGGUCCU-----ACCAGCCG-----A--------------AGGUCUU- -5'
19760 3' -55.9 NC_004687.1 + 112656 0.67 0.81387
Target:  5'- -gCACCuGGGAUGGU-GGUUUCCcGAAa -3'
miRNA:   3'- uaGUGG-UCCUACCAgCCGAAGGuCUU- -5'
19760 3' -55.9 NC_004687.1 + 110584 0.67 0.81387
Target:  5'- cUgGCCGGGGUgcccccGGUCGGCgcugCCGGGu -3'
miRNA:   3'- uAgUGGUCCUA------CCAGCCGaa--GGUCUu -5'
19760 3' -55.9 NC_004687.1 + 138216 0.67 0.80489
Target:  5'- cGUguCCAGGGUgacguugaGGUCGGCgaCCGGAc -3'
miRNA:   3'- -UAguGGUCCUA--------CCAGCCGaaGGUCUu -5'
19760 3' -55.9 NC_004687.1 + 20009 0.67 0.80489
Target:  5'- -gCugCGGGAUGGugUCGGCgUCgCAGAc -3'
miRNA:   3'- uaGugGUCCUACC--AGCCGaAG-GUCUu -5'
19760 3' -55.9 NC_004687.1 + 89835 0.67 0.80489
Target:  5'- uUCACCAaGGUGGcggUGGaCUUCCGGGAc -3'
miRNA:   3'- uAGUGGUcCUACCa--GCC-GAAGGUCUU- -5'
19760 3' -55.9 NC_004687.1 + 16093 0.68 0.795747
Target:  5'- cGUCGCCGGGAUcaucgaggcggcGGUCGGCaacgCCGuGAc -3'
miRNA:   3'- -UAGUGGUCCUA------------CCAGCCGaa--GGU-CUu -5'
19760 3' -55.9 NC_004687.1 + 107955 0.68 0.777007
Target:  5'- -cCACCGGcuucGGUCGGCUgggCCGGAu -3'
miRNA:   3'- uaGUGGUCcua-CCAGCCGAa--GGUCUu -5'
19760 3' -55.9 NC_004687.1 + 1477 0.68 0.757725
Target:  5'- uUCugCGGGGUGGUCGuCgaCCAGGu -3'
miRNA:   3'- uAGugGUCCUACCAGCcGaaGGUCUu -5'
19760 3' -55.9 NC_004687.1 + 17159 0.68 0.753811
Target:  5'- gGUCACCgaGGGAUcGUCGGCgucgagcuugccgUCCAGGg -3'
miRNA:   3'- -UAGUGG--UCCUAcCAGCCGa------------AGGUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.