miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19760 5' -59.3 NC_004687.1 + 41880 0.66 0.790484
Target:  5'- cGUCGCC-GA-CgACCGGGCCCCccgGGg -3'
miRNA:   3'- aCGGCGGuCUcGgUGGUUUGGGGa--CC- -5'
19760 5' -59.3 NC_004687.1 + 13873 0.66 0.790484
Target:  5'- aGCCGCaCGGcuUCACCGacGACCugguCCUGGa -3'
miRNA:   3'- aCGGCG-GUCucGGUGGU--UUGG----GGACC- -5'
19760 5' -59.3 NC_004687.1 + 151303 0.66 0.790484
Target:  5'- -cCCGCCAG-GaCACCGagGACCgCUGGc -3'
miRNA:   3'- acGGCGGUCuCgGUGGU--UUGGgGACC- -5'
19760 5' -59.3 NC_004687.1 + 155626 0.66 0.790484
Target:  5'- aGCCGCCA-AGCUgGCCGucGACCUCaGGa -3'
miRNA:   3'- aCGGCGGUcUCGG-UGGU--UUGGGGaCC- -5'
19760 5' -59.3 NC_004687.1 + 33959 0.66 0.790484
Target:  5'- cGCCGCCAccGCCuugGCCAGAUCuCCg-- -3'
miRNA:   3'- aCGGCGGUcuCGG---UGGUUUGG-GGacc -5'
19760 5' -59.3 NC_004687.1 + 138947 0.66 0.790484
Target:  5'- cGCCaGCCuggAGGGCCGCguCGAGgaCCUGGa -3'
miRNA:   3'- aCGG-CGG---UCUCGGUG--GUUUggGGACC- -5'
19760 5' -59.3 NC_004687.1 + 129432 0.66 0.7878
Target:  5'- aUGCCGCCuucgAGGGCCAuccgccgcgucggcUCAGGCaggUCUGGa -3'
miRNA:   3'- -ACGGCGG----UCUCGGU--------------GGUUUGg--GGACC- -5'
19760 5' -59.3 NC_004687.1 + 14923 0.66 0.785103
Target:  5'- aGCCGCaucCAGGGCCgucggaucagcuccuACCAGuucaCCCUGa -3'
miRNA:   3'- aCGGCG---GUCUCGG---------------UGGUUug--GGGACc -5'
19760 5' -59.3 NC_004687.1 + 121009 0.66 0.78149
Target:  5'- gUGCCGCCGccAGCCugACCGAGuuCCUcGGc -3'
miRNA:   3'- -ACGGCGGUc-UCGG--UGGUUUggGGA-CC- -5'
19760 5' -59.3 NC_004687.1 + 48807 0.66 0.78149
Target:  5'- cGCCGgaCGGGGCCACCuGGGCCa--GGa -3'
miRNA:   3'- aCGGCg-GUCUCGGUGG-UUUGGggaCC- -5'
19760 5' -59.3 NC_004687.1 + 30329 0.66 0.78149
Target:  5'- cGCCcucgGCCAGGGCCucaCGGGCCaCCggcaGGu -3'
miRNA:   3'- aCGG----CGGUCUCGGug-GUUUGG-GGa---CC- -5'
19760 5' -59.3 NC_004687.1 + 98650 0.66 0.78149
Target:  5'- gUGCUGCUu-GGCCACCucgucGGCCaucgCCUGGa -3'
miRNA:   3'- -ACGGCGGucUCGGUGGu----UUGG----GGACC- -5'
19760 5' -59.3 NC_004687.1 + 65480 0.66 0.78149
Target:  5'- aGCUGCCcGAGgCGCCGAGCCggaUGa -3'
miRNA:   3'- aCGGCGGuCUCgGUGGUUUGGgg-ACc -5'
19760 5' -59.3 NC_004687.1 + 35501 0.66 0.78149
Target:  5'- uUGCCcugaGCCAGGGCCcggucgauCCAcuGCCCCa-- -3'
miRNA:   3'- -ACGG----CGGUCUCGGu-------GGUu-UGGGGacc -5'
19760 5' -59.3 NC_004687.1 + 145210 0.66 0.78149
Target:  5'- cGCUgGCCAGGG-CGCCG-ACCCCa-- -3'
miRNA:   3'- aCGG-CGGUCUCgGUGGUuUGGGGacc -5'
19760 5' -59.3 NC_004687.1 + 133703 0.66 0.78149
Target:  5'- cUGCCGCaacccuGGcCCACCAuguGGCCCCgaccUGGg -3'
miRNA:   3'- -ACGGCGguc---UC-GGUGGU---UUGGGG----ACC- -5'
19760 5' -59.3 NC_004687.1 + 32111 0.66 0.78149
Target:  5'- gGUgGCCAGGGCCcugGCCAGAUcuucgCCgaGGu -3'
miRNA:   3'- aCGgCGGUCUCGG---UGGUUUG-----GGgaCC- -5'
19760 5' -59.3 NC_004687.1 + 89282 0.66 0.78149
Target:  5'- gGCUGCgCuuGGCCAUCuucACCgCCUGGg -3'
miRNA:   3'- aCGGCG-GucUCGGUGGuu-UGG-GGACC- -5'
19760 5' -59.3 NC_004687.1 + 133894 0.66 0.78149
Target:  5'- aGgCGCCAGAGCUG-CAGGCCCg--- -3'
miRNA:   3'- aCgGCGGUCUCGGUgGUUUGGGgacc -5'
19760 5' -59.3 NC_004687.1 + 144684 0.66 0.780584
Target:  5'- aGCCGUUGGGGCaggcgagcacccgCACUuGGCCuCCUGGc -3'
miRNA:   3'- aCGGCGGUCUCG-------------GUGGuUUGG-GGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.